YRC Public Data Repository - Protein Structure Prediction

Protein:	CG16894-PA
Organism:	Drosophila melanogaster
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG16894-PA.

Description	E-value	Query Range	Subject Range
gi\|18447100 - gi\|18447100\|gb\|AAL68141.1\| AT29981p [Drosophila melanogaster]	252.0	[0..1]	[266..1]
gi\|61370052, gi\|... - gi\|61370062\|gb\|AAX43432.1\| cell division cycle 34 [synthetic construct], gi\|61370052\|gb\|AAX43431.1\| ...	191.0	[0..7]	[249..3]
gi\|2136341, gi\|3... - gi\|388309\|gb\|AAC37534.1\| ubiquitin conjugating enzyme, gi\|2136341\|pir\|\|A49630 ubiquitin conjugating ...	190.0	[0..7]	[248..65]
gi\|94388393 - gi\|94388393\|ref\|XP_987570.1\| PREDICTED: similar to cell division cycle 34 homolog isoform 2 [Mus mus...	187.0	[0..7]	[248..55]
gi\|76621728 - gi\|76621728\|ref\|XP_873214.1\| PREDICTED: similar to cell division cycle 34 homolog [Bos taurus]	184.0	[0..26]	[248..48]
gi\|62738886 - gi\|62738886\|pdb\|1Z2U\|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme...	178.0	[0..13]	[177..5]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWYSTVRNPS IALIKQGYHI LAEYNLVKEE LKNIYAIPSY ACGLHWFGVI FVHSGIYAGS  60
   61 VFRFSILLPE NFPADISLPT VVFSTEVLHP HICPQNKTLD LAHFLNEWRK DEHHIWHVLR 120
  121 YIQAIFADPE GSICTGQSSS GDLVIMDEVR NMNALNMLAK SRPEYIKRVQ EQAILSRNLI 180
  181 YDRPPTEDPH YIIVEPYCAE RHLKFMDQLK SPCWKEATSM DCSQPSEYLG HIDSSRQLDE 240
  241 EEANQVEKLH RGRIPEHQRE ESEVSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	2pwqA
Description:	No description for 2pwqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits