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View Structure Prediction Details

Protein: par-1-PC, par-1-...
Organism: Drosophila melanogaster
Length: 1060 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for par-1-PC, par-1-....

Description E-value Query
Range
Subject
Range
par-1-PT - The gene par-1 is referred to in FlyBase by the symbol Dmel\par-1 (CG8201, FBgn0260934). It is a pro...
637.0 [0..1] [1060..1]

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Predicted Domain #1
Region A:
Residues: [1-295]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEATTTTTPD LNRGDATRKS VRLYAARKGA APAPPKLSVA PSSNQNSNHS SNNNNSSSNL  60
   61 PETEKEMELR QTHLANKDLD GATEDDSIVE LRRRDAQATP LPRIAVSALP TLQPHPTPKE 120
  121 RQKPPMPRLL STEDDAGVSF ALGSIEKHIH NVEESFKQQQ QNQQSQSSMD VMKLEIKRKQ 180
  181 SKRYGETENL LRPGISDMSS ENDFQYLGGR RAGELDDSNE LMLSEFQRGS DGRNSIGAYS 240
  241 KNSAAAANGA NAVKAKLART ASDTKNNDTV LAMRATFKQK QHLQDEKQPA VWRPA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [296-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTGPTPAARS SSSTTSTSGS ASRGGSSSSV VDGVAPSKLT ATTISASKRR EENLRQFEAL  60
   61 LAQKSSHRHG ASGASGTGSN AASSKRRSDR PIVAPIPPYN SSRAEHVTSS TRHSVDPRSH 120
  121 SGHESRSGTA STHPPVGH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [434-742]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPTSRVPSVV ANRSNVYSNN AAQGSPNMQM RSSAPMRWRA TEEHIGKYKL IKTIGKGNFA  60
   61 KVKLAKHLPT GKEVAIKIID KTQLNPGSLQ KLFREVRIMK MLDHPNIVKL FQVIETEKTL 120
  121 YLIMEYASGG EVFDYLVLHG RMKEKEARVK FRQIVSAVQY CHQKRIIHRD LKAENLLLDS 180
  181 ELNIKIADFG FSNEFTPGSK LDTFCGSPPY AAPELFQGKK YDGPEVDVWS LGVILYTLVS 240
  241 GSLPFDGSTL RELRERVLRG KYRIPFYMST DCENLLRKFL VLNPAKRASL ETIMGDKWMN 300
  301 MGFEEDELK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.154902
Match: 2ozoA
Description: No description for 2ozoA was found.

Predicted Domain #4
Region A:
Residues: [743-779]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYIEPKADLA DPKRIEALVA MGYNRSEIEA SLSQVRY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 98.045757
Match: 1zmuA
Description: Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Wild type
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [780-1060]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDVFATYLLL GRKSTDPESD GSRSGSSLSL RNISGNDAGA NAGSASVQSP THRGVHRSIS  60
   61 ASSTKPSRRA SSGAETLRVG PTNAAATVAA ATGAVGAVNP SNNYNAAGSA ADRASVGSNF 120
  121 KRQNTIDSAT IKENTARLAA QNQRPASATQ KMLTTADTTL NSPAKPRTAT KYDPTNGNRT 180
  181 VSGTSGIIPR RSTTLYEKTS STEKTNVIPA ETKMASAVKS SRHFPRNVPS RSTFHSGQTR 240
  241 ARNNTALEYS GTSGASGDSS HPGRMSFFSK LSSRFSKRPN Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle