YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|28573729, gi|...
Organism: Drosophila melanogaster
Length: 1593 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28573729, gi|....

Description E-value Query
Range
Subject
Range
gi|7650388 - gi|7650388|gb|AAF66018.1|AF232668_1 Kalirin-9a [Rattus norvegicus]
633.0 [0..565] [1567..1234]

Back

Predicted Domain #1
Region A:
Residues: [1-166]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPGAKQLNT SAIPNAAPSA VCPGINHFMQ QNYGKYRGIT SMCAAQAHQH CSTSVAGDRL  60
   61 LGSSTELAPS LLGIYDTLTN SFAAGGVAAA PTATSHESKA SSSGDSTPKR SNSNCSSSSS 120
  121 TGSSTGSCSS VPTSDDQSAS YTLASSSTHL GHQEPPAPLV VAGLRD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [167-350]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPDGAQLSRL VQRRSQESQI HGSSSSIASS GSSRRGSNIR ILSPNVHRII THSDIQPVEA  60
   61 VSAEALKQHQ QQSQRSPTQG RYIKTGHSGT PPAAGSAPKL KLSHIPLSKI TGKLSTQSGS 120
  121 ELVSTFDSSN EYLNSVAFAA FEKSKPQDED RTPTNKSVPG TPFHFDGHPF QGRKLTLPRY 180
  181 DSQQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [351-545]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIKLIEMEQL AATSAQLLHA KPATPGTPAT PTPSATKAKE FVCSEPLSPV DIVDTINFDL  60
   61 VAQHMERLTL ADPGDLDPRA ELIEAVNKTL VNKPLVRSSS AACASTICSS PLLTYARTKS 120
  121 LGAKASTLGG GVPIKLPTAE QLAELEEANK LSAESLDRLT DIKPKFAARL SELARLNNRP 180
  181 LSSSSICSTS SSSSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [546-951]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSDQLLNGKL MATSYLASVE SLAESENELG DQHHPPAMSV LEKTCLEIVD SERSFVEDLG  60
   61 QVIKGYLQDW KERACLRVDE LQILFANIEE IYEFNSMLLQ RLINTGRDPG RIARCFIDLR 120
  121 DGFDVYTTYC TSYPEAISLL TKLLQATHTY SLLASTQKLL QHRLPLGSYL LKPVQRILKY 180
  181 HLLLDSLRKH CDVKEVVEAH VIMRQVAHNI DQVKRKQEQQ SRVKELSGIL DGWLGPELTV 240
  241 LGELRQEGLL MEQHNKQRLV LLFATMLIIT KQKEDGRLQF KTYISQNNLM LSEHLPGEPT 300
  301 SFYVIPFDEP RHQIKLTARN RDQKRIWTQH IKGVMLEKLD IPMRAKELVY QLGNEEDRTP 360
  361 DRSTWKWSLH SGSNSTPTYL ERRNACRRSE IRQRNSKFKR KTVANS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.39794
Match: 2dfkA
Description: No description for 2dfkA was found.

Predicted Domain #5
Region A:
Residues: [952-1024]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSFDSFNESL EQEEESISQA KPSKPLARNN SLDDTALQKL AAAMRYRKRD AAVKEETKTP  60
   61 VKEPCKCDQD AKQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [1025-1216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DERIEPCSCI LRDQRSRSAK SQSPVFSYKA LKERSKSVPR IGGFSLDEEA EREREQDEDS  60
   61 AASLRGSKPD LSERKTKGKG FFEVKQYNHK TMPKKIANLK KQRSSTTKSC SRFYMDLSEF 120
  121 DSSSSTVLKI TESTEELRPD GEIELAQEAA TLDESTQDQY YSPDHETELL SPAEKSKRDA 180
  181 QIVLDLLKNS KE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1217-1310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FERIYNKQQK RRESPVSPVS PDISRGPILP PPRPPSRSPP PLELEEQEKK PVEEVDSVSE  60
   61 EPIYETLLRN VHVPYKFSPV LGRAKSSQIL KKRS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1311-1394]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTAPAASRPE SDYVTLVYSP EGVLQRVGEE VVQRDSCSSS TTSTSSNGSG STLKRDSQST  60
   61 VINLLMEAAQ EHESRPLPKN SVSG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1395-1593]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SESSLLPRAL KSIDNLSMAF GRSNRPPERR VSDVSEMCRQ SVLHRQGSEA VGERMAHVDY  60
   61 ADPKALFGLG VLNHSERDSV FSLTSSSSDS MCEQQRKRSG VGATFEYEQQ VEDSLENDFR 120
  121 DSAIYSDDNE KRSGDYDVHL RRPSSPPPPP PPLGPRPHQP PQIAPKPSKD QLIQQRSGVI 180
  181 VCQSASRSWV LQQIENFNK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle