YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0302902, CG1...
Organism:	Drosophila melanogaster
Length:	57 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0302902, CG1....

Description	E-value	Query Range	Subject Range
gi\|54635804, gi\|... - gi\|54635804\|gb\|EAL25207.1\| GA13018 [Drosophila pseudoobscura pseudoobscura], gi\|125808105\|ref\|XP_001... gi\|125808105\|ref... - GA13018-PA [Drosophila pseudoobscura], GA13018 [Drosophila pseudoobscura pseudoobscura] gi\|194110056, gi... - gi\|195150541\|ref\|XP_002016209.1\| GL10620 [Drosophila persimilis], gi\|194110056\|gb\|EDW32099.1\| GL1062...	77.0	[0..1]	[57..1]
gi\|91075924 - gi\|91075924\|ref\|XP_966963.1\| PREDICTED: similar to CG14482 CG14482-PA [Tribolium castaneum]	61.0	[0..2]	[55..4]
gi\|108883934, gi... - gi\|157110173\|ref\|XP_001650983.1\| ubiquinol cytochrome C oxidoreductase-subunit 6.4kD-subunit, putati...	60.0	[0..4]	[55..2]
gi\|110766355 - gi\|110766355\|ref\|XP_001122499.1\| PREDICTED: similar to CG14482-PA [Apis mellifera]	53.0	[0..8]	[54..4]
gi\|47228346 - gi\|47228346\|emb\|CAG07741.1\| unnamed protein product [Tetraodon nigroviridis]	53.0	[0..8]	[57..7]
gi\|67083887 - gi\|67083887\|gb\|AAY66878.1\| ubiquinol-cytochrome C reductase [Ixodes scapularis]	48.0	[0..7]	[55..5]

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Predicted Domain #1

Region A:
Residues: [1-57]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFRIPFGKK HAEIASSFIR SGAGFGGAAG LAVLYYTDWK LVLQYVPIYG SKFEKSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	1sqqK
Description:	Crystal Structure Analysis of Bovine Bc1 with Methoxy Acrylate Stilbene (MOAS)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	10.4724593959434	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	10.4724593959434	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	7.08415544091383	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	4.61333009565423	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	4.47005226079757	bayes_pls_golite062009
oxidoreductase activity	4.32860875825577	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	3.92118826313964	bayes_pls_golite062009
cation transmembrane transporter activity	3.73835186034078	bayes_pls_golite062009
ion transmembrane transporter activity	3.57481672162586	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.23038036454094	bayes_pls_golite062009
substrate-specific transporter activity	3.08770951961336	bayes_pls_golite062009
electron carrier activity	2.79989745668854	bayes_pls_golite062009
catalytic activity	0.424959044318554	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: