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View Structure Prediction Details

Protein: eIF3-S9-PB, eIF3...
Organism: Drosophila melanogaster
Length: 690 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for eIF3-S9-PB, eIF3....

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
498.0 [0..68] [654..1154]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKKSEEHS GTDANDSDYQ EEPNFDDPPG FVDNISDEDL LGDMLAQRPS EADGVESVVV  60
   61 VDNIPKVEPV RLEKLKLVIN KLFSNYGEIV NVVYPVDEEG KTKGYAFME

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.30103
Match: 2nlwA
Description: No description for 2nlwA was found.

Predicted Domain #2
Region A:
Residues: [110-520]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKQARQAEEA VKKLNNHRLD KNHTFAVNLF TDFQKYENIP EKWEPPTVQT FKVQSDLYNF  60
   61 INDPDTYDQY CVAAETAPNC VQVGFWQNVL PEPFELETRE RFTDTFVKWS PLGTYVVTFH 120
  121 KPGVAIWGGS SFQKIQKFPH PGTQFVEFSP CENYLVTYGP TPTGQKIIIW DIRTGAEKRS 180
  181 FVADGMSVLS MFRWSHDDKF VARMGENSIH IYETPSFYLL DLKSIKIPGI RGFSWSPTDN 240
  241 VIAYWVEEQN QIPARVTLME IPKKREIRNK NLFHVADCKL HWQKSGDYLC VKVDRYSKLK 300
  301 KDKKDLDVKF LGMFYNFEIF HMREKEIPVD SVEIRELILA FAWEPVGNKF SIIHGETNSS 360
  361 NVSFYEVNKG VKPSLVKRLE KKSCTHLFWS PRGQFIVMAN LTMGTFEFVD S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.522879
Match: 2ovpB
Description: No description for 2ovpB was found.

Predicted Domain #3
Region A:
Residues: [521-603]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNDYIITASP DHFRASEVEW DPTGRYVVTG VSSWKVKEDT GFNMYTFQGR IIKRTILKNF  60
   61 VQFLWRPRPP TLLSEEKQKE IKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.69897
Match: 2gnqA
Description: No description for 2gnqA was found.

Predicted Domain #4
Region A:
Residues: [604-690]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLKKYYAAFE QKDRLRLTRA SKELLEKRSQ LRETFMEYRN KRIAEWAEQK SRRIMLRGHV  60
   61 DTDNLETDEV DEEIVEFLVK EEVTLLE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle