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View Structure Prediction Details

Protein: gi|7303012, gi|2...
Organism: Drosophila melanogaster
Length: 1086 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7303012, gi|2....

Description E-value Query
Range
Subject
Range
gi|73965857, gi|... - gi|73965887|ref|XP_861351.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)...
1023.0 [0..1] [1086..1]

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Predicted Domain #1
Region A:
Residues: [1-419]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKAITEAS GKDILNRHLN THGAGAATCR FSTVNSTTDW SKLAVDHPWL LTTPLVCKPD  60
   61 QLIKRRGKLG LIGVKKNFEQ VKQWIGERLN KDQKIGNAVG KLRNFIIEPF VPHTDAEEMY 120
  121 VCIYSHRAAD TILFYHQGGV DIGDVDAKAV KLDVPVNSSL SLADVKSKLL KEVKDAGTKE 180
  181 RIAKFVSALY TTYVDLYFTY LEINPLVVTA DNLYILDLAA KLDSTADFIC RPKWGEIDYP 240
  241 PPFGRDAYPE EAYIADLDAK SGASLKLTIL NRNGRIWTMV AGGGASVIYS DTICDLGGAS 300
  301 ELANYGEYSG APSEQQTYEY AKTILNLMTS SPKHPDGKVL ITGGGIANFT NVAATFQGII 360
  361 TALREFQPKL VEHNVSIFVR RAGPNYQEGL RKMRDFGSTL GIPLHVFGPE THMTAICGM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 1jkjB
Description: Succinyl-CoA synthetase, beta-chain, C-terminal domain; Succinyl-CoA synthetase, beta-chain, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
succinate-CoA ligase activity 11.5979130191209 bayes_pls_golite062009
CoA-ligase activity 10.4192804448897 bayes_pls_golite062009
acid-thiol ligase activity 10.243481928473 bayes_pls_golite062009
ligase activity, forming carbon-sulfur bonds 9.48706872092269 bayes_pls_golite062009
succinate-CoA ligase (ADP-forming) activity 9.35325976720833 bayes_pls_golite062009
succinate-CoA ligase (GDP-forming) activity 6.10836030777262 bayes_pls_golite062009
ATP citrate synthase activity 6.07828121800931 bayes_pls_golite062009
citrate (pro-3S)-lyase activity 5.30284195415066 bayes_pls_golite062009
CoA carboxylase activity 4.07446700881636 bayes_pls_golite062009
acetyl-CoA carboxylase activity 3.99316522494514 bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds 3.81289459554571 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 3.35963055171077 bayes_pls_golite062009
carbamoyl-phosphate synthase activity 2.72598634080471 bayes_pls_golite062009
carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity 2.64774423341735 bayes_pls_golite062009
biotin carboxylase activity 2.54447190719035 bayes_pls_golite062009
ligase activity 2.30626698552338 bayes_pls_golite062009
oxo-acid-lyase activity 2.241458285404 bayes_pls_golite062009
catalytic activity 1.90735517755117 bayes_pls_golite062009
phosphoribosylaminoimidazole carboxylase activity 1.73669882098773 bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer 1.34604636411023 bayes_pls_golite062009
phosphoribosylamine-glycine ligase activity 1.23437256414757 bayes_pls_golite062009
acid-amino acid ligase activity 1.10474980073192 bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor 1.04673851330289 bayes_pls_golite062009
nucleotide binding 0.604878609358233 bayes_pls_golite062009
purine nucleotide binding 0.6001056330562 bayes_pls_golite062009
ribonucleotide binding 0.585676018122244 bayes_pls_golite062009
purine ribonucleotide binding 0.585256446905581 bayes_pls_golite062009
acetyltransferase activity 0.354495767382723 bayes_pls_golite062009
glutathione synthase activity 0.158287661667506 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [420-720]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALGKRPIPQT ASVEFSTANF LLPGGQQAQA DLKAASDASE ALGSGSADEA DSAGISGAQR  60
   61 NGSSLNRKFF SNTTKAIVWG MQQRAVQRDE PSVVAMVYPF TGDHKQKYYW GHKEILIPVY 120
  121 KKMSDAIHKH KEVDVMVNFA SMRSAYESTL EVLEFPQIRT VAIIAEGIPE NMTRKLIIEA 180
  181 DKKGVAIIGP ATVGGVKPGC FKIGNTGGML DNILHSKLYR PGSVAYVSRS GGMSNELNNI 240
  241 ISKATDGVIE GIAIGGDRYP GSTFMDHILR YQADPETKLI VLLGEVGGTE EYDVCAALKD 300
  301 G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 93.69897
Match: 1jkjA
Description: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain; Succinyl-CoA synthetase, alpha-chain, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
succinate-CoA ligase activity 4.98013776954984 bayes_pls_golite062009
CoA-ligase activity 4.35815624912718 bayes_pls_golite062009
acid-thiol ligase activity 4.2282982893826 bayes_pls_golite062009
ligase activity, forming carbon-sulfur bonds 3.82878743369312 bayes_pls_golite062009
malate dehydrogenase activity 3.73899222825747 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 3.18548497718796 bayes_pls_golite062009
succinate-CoA ligase (ADP-forming) activity 3.05087440872447 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 2.56635944108218 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 2.56237767568509 bayes_pls_golite062009
cation transmembrane transporter activity 2.3793692436067 bayes_pls_golite062009
ion transmembrane transporter activity 2.15364185593759 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.85842298395473 bayes_pls_golite062009
catalytic activity 1.79741889688267 bayes_pls_golite062009
substrate-specific transporter activity 1.74270988861575 bayes_pls_golite062009
fatty acid synthase activity 1.23679054027553 bayes_pls_golite062009
methylenetetrahydrofolate dehydrogenase activity 0.974298363844148 bayes_pls_golite062009
oxidoreductase activity 0.9367410227151 bayes_pls_golite062009
methenyltetrahydrofolate cyclohydrolase activity 0.696602339330799 bayes_pls_golite062009
3-oxoacyl-[acyl-carrier-protein] reductase activity 0.604742541607263 bayes_pls_golite062009
DNA binding 0.525227236870065 bayes_pls_golite062009
nucleic acid binding 0.459537641913493 bayes_pls_golite062009
ribonucleotide binding 0.444544079187632 bayes_pls_golite062009
purine ribonucleotide binding 0.444104594263908 bayes_pls_golite062009
malic enzyme activity 0.431922445809582 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 0.418775403210681 bayes_pls_golite062009
purine nucleotide binding 0.386364402115347 bayes_pls_golite062009
nucleotide binding 0.327349935545314 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 0.32207755075663 bayes_pls_golite062009
transcription regulator activity 0.152651308844322 bayes_pls_golite062009
malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity 0.120195861875768 bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity 0.00644214957417527 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [721-1086]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RITKPLVAWC IGTCASMFTS EVQFGHAGSC ANSDRETATA KNKGLRDAGA YVPDSFDTLG  60
   61 ELIHHVYGEL VKTGRVVPKE EVPPPTVPMD YSWARELGLI RKPASFMTSI CDERGQELIY 120
  121 AGMPISEVLS KDVGIGGVIS LLWFQRCLPS YVCKFFEMCL MVTADHGPAV SGAHNTIVCA 180
  181 RAGKDLVSSV VSGLLTIGDR FGGALDGSAR QFSEAYDTNL HPMEFVNKMR KEGKLILGIG 240
  241 HRVKSINNPD VRVKIIKEFV LENFPACPLL KYALEVEKIT TNKKPNLILN VDGVIATAFV 300
  301 DMLRNSGSFT SEEAQEYINV GAINSLFVLG RSIGFIGHYM DQKRLKQGLY RHPWDDISYV 360
  361 IPEQYN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 100.0
Match: 1k3pA
Description: Citrate synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
citrate (Si)-synthase activity 5.74736490002685 bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer 5.63245943049967 bayes_pls_golite062009
oxo-acid-lyase activity 3.68894211625793 bayes_pls_golite062009
transferase activity, transferring acyl groups 2.88522337475651 bayes_pls_golite062009
catalytic activity 2.51855037019879 bayes_pls_golite062009
transferase activity 2.22659761972612 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle