YRC Public Data Repository - Protein Structure Prediction

Protein:	Vha14-PA
Organism:	Drosophila melanogaster
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Vha14-PA.

Description	E-value	Query Range	Subject Range
VATF1_DROPS - V-type proton ATPase subunit F 1 OS=Drosophila pseudoobscura pseudoobscura GN=Vha14 PE=2 SV=2 VATF1_DROPS - Vacuolar ATP synthase subunit F - Drosophila pseudoobscura (Fruit fly) gi\|195171787, gi... - gi\|195171787\|ref\|XP_002026685.1\| GL11862 [Drosophila persimilis], gi\|194111611\|gb\|EDW33654.1\| GL1186...	183.0	[0..1]	[124..1]
VATF_AEDAE - V-type proton ATPase subunit F OS=Aedes aegypti GN=AAEL002464 PE=2 SV=1	177.0	[0..1]	[123..1]
gi\|95102930, gi\|... - gi\|95102930\|gb\|ABF51406.1\| vacuolar ATP synthase subunit F [Bombyx mori], gi\|114052036\|ref\|NP_001040...	177.0	[0..1]	[124..1]
VATF_MANSE - V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1	176.0	[0..1]	[124..1]
VATF_ANOGA - V-type proton ATPase subunit F OS=Anopheles gambiae GN=Vha14 PE=2 SV=2 gi\|55242303, gi\|... - gi\|58383226\|ref\|XP_312465.2\| AGAP002473-PA [Anopheles gambiae str. PEST], gi\|55242303\|gb\|EAA08191.2\|...	176.0	[0..1]	[123..1]
gi\|91076898 - gi\|91076898\|ref\|XP_975016.1\| PREDICTED: similar to vacuolar ATP synthase subunit F [Tribolium castan...	175.0	[0..1]	[123..1]
ATP6V1F - ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F gi\|114658592, gi... - gi\|114658594\|ref\|XP_001160789.1\| PREDICTED: similar to ATPase, H+ transporting, lysosomal 14kD, V1 s...	172.0	[0..6]	[122..2]
gi\|66529931 - gi\|66529931\|ref\|XP_624852.1\| PREDICTED: similar to Vacuolar H+ ATPase 14kD subunit CG8210-PA [Apis m...	171.0	[0..1]	[122..1]
VATF_BOVIN - V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2	170.0	[0..6]	[122..2]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALHSAIKGK LISVIGDEDT CVGFLLGGVG EINKNRHPNF MVVDKNTAVS ELEDCFKRFL  60
   61 KRDDIDIILI NQNCAELIRH VIDAHTSPVP AVLEIPSKDH PYDASKDSIL RRARGMFNPE 120
  121 DLVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	2qaiA
Description:	No description for 2qaiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits