YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: FBpp0301824, FBp...
Organism: Drosophila melanogaster
Length: 491 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0301824, FBp....

Description E-value Query
Range
Subject
Range
gi|55770563 - ref|XP_550272.1| putative receptor-like protein kinase INRPK1 [Oryza sativa (japonica cultivar-group...
gi|115434762, gi... - gi|55770563|ref|XP_550272.1| putative receptor-like protein kinase INRPK1 [Oryza sativa (japonica cu...
322.0 [0..1] [491..130]

Back

Predicted Domain #1
Region A:
Residues: [1-491]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACYYRQHAD TTVTVPKFSN ESSSGGVTYY DIKVRVGKVE WLVERRYRDF ANLHEKLVGE  60
   61 ISISKKLLPP KKLVGNKQPS FLEQRREQLE IYLQELLIYF RTELPRALAE FLDFNKYDII 120
  121 YLLQDLAKLF NESGDALLSS KKEYNLSALE VYAISERLSL PCPPSLDRGG KYDFSHVLDF 180
  181 CTQLVALVVT PVKDNASYAQ DYNTVDVPID RSNIIPNRLS FNLNAFRNLK TLKFSALSTE 240
  241 NIVDIELLKP TLQTICVHNT TIQNINQVLL CDNLHKHCDV PSLLPETILA SPSGSGPSTS 300
  301 NGSALVSADA WQEITELDLT GNLLTQIDGS VRTAPKLRRL ILDQNRIRTV QNLAELPQLQ 360
  361 LLSLSGNLIA ECVDWHLTMG NLVTLKLAQN KIKTLSGLRK LLSLVNLDLS SNQIEELDEV 420
  421 NHVANLPLLE TLRLTGNPLA GSVDYRSRVL ARFHERAAEI SLDNEPGNQQ ELDTALVLSA 480
  481 LLQSKQRQQQ K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.0
Match: 2a0zA
Description: The molecular structure of toll-like receptor 3 ligand binding domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle