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View Structure Prediction Details

Protein: FBpp0311546, hbs-PB
Organism: Drosophila melanogaster
Length: 1235 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0311546, hbs-PB.

Description E-value Query
Range
Subject
Range
gi|6625978 - gi|6625978|gb|AAF19446.1|AF210316_1 hibris [Drosophila melanogaster]
728.0 [0..1] [1235..1]

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Predicted Domain #1
Region A:
Residues: [1-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFWITLTFA VHLATTICHV MAAVTAPTPA AQVAAPPVQK FHLTPHDLQI LEGTDTLLRC  60
   61 EVSNRAGKVQ WTKDGFALGF SAVIPGFPRY SVLVDAKQNA YNLQIKNATL EDDAEYQCQV 120
  121 GPAAGNPAIR ANAKLSIVAA PSSIVIEGYA RNARVEVEER QNLTLHCIAE NANPAAEIVW 180
  181 FQGEVPVS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.522879
Match: 2v5sA
Description: No description for 2v5sA was found.

Predicted Domain #2
Region A:
Residues: [189-830]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAPIVTVNQT APKRFTTSST LHLQPRAEDD YKEFSCEARH KALPPDVPMR AQVQLSVLYP  60
   61 PGAPFFEGYS QGETLHRGQE VQIACRSRGG NPPAQLTWYR NGVAISSPQR TSGRLSENVY 120
  121 KFTAAAEDNG ANLVCEAKNL LATTPLRAEL NLTVLYAPKD VYLSGANQAK VGDSVQLSCV 180
  181 TAPSNPQARI SWSINGRPLD NSTYKTTSSS DGGWVSSSNI SLTIDSQSRT FIAVCHALNT 240
  241 ELTQNVVGSH TVNVLYPPSP PLLTGYNDGD ILISGSILKL QCSSAGGNPP PTLQWYKNDK 300
  301 IINAPSKLVD SKITSELSLL VNASDNNAIY KCKVQNAAID IPLFATKTLG VHFPPETVKI 360
  361 SVVPKNLVPG IRAKLICDSS SSNPPAKISW WKDGIPVEGL NLANRPGLWG GSVSTLEMYV 420
  421 NITQDLDGIV YTCQSHNEVL QRSVHETISL DILYPPKFET PQSTTFVGVE GAPFHVELLA 480
  481 SGNPMVITYT WTKDGLPISS NSLSGQRLIS DGPRLNISRL SRNDAGVYIC EALNSQGTAL 540
  541 LEIQVAVEYA PTITAVSEGR SFVAGEPAVL ACHIQARPLE AAHVRWSRDG YDLATRTISS 600
  601 FENGTALLQI ASVERSDIGN FTCIVDNQRG APAAQNVLLV VQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.522879
Match: 1e07A
Description: Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [831-1032]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAPEIDHSPG FTRYAARLGV RAQLICRSLA SPQPSFIWRR HGKDLKMQRR NKFKSVERQV  60
   61 DALNFESALL IENTSPDDYG QYECVVRNSL GQASTTLEFS KPSRPDAPLQ LRVGNVSDTG 120
  121 VDLNWTPGFD GGMQTYFRLR LKQHGEDKYK YVDAKPGHQN ISLDGLKPGA TYYFSVMAAN 180
  181 EAGGSKFMPD IKLTLSKGSQ PH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.221849
Match: 2nziA
Description: No description for 2nziA was found.

Predicted Domain #4
Region A:
Residues: [1033-1125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAEYTEKDEL PNVMIIGITS AAMVLLVLNA ALVAWFVIRR QNKSQSEAEP SNDDVYSKDD  60
   61 SQSVYKLPIT ALQADVQKKA AASTYLVENV DII

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.154902
Match: 1cfbA
Description: CRYSTAL STRUCTURE OF TANDEM TYPE III FIBRONECTIN DOMAINS FROM DROSOPHILA NEUROGLIAN AT 2.0 ANGSTROMS
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [1126-1235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSTAYPPKYQ ESSMCTPPYP LCNPDFTRTL PNPKRHSQRN SATGMIEGMQ MRSKDDHMLI  60
   61 SNGLYIPSPS PASSLVIKGS YISSPSPAPP ADGSYFNMSD KYMSYPPVTY 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle