YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: Ercc1-PA
Organism: Drosophila melanogaster
Length: 259 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ercc1-PA.

Description E-value Query
Range
Subject
Range
gi|60655939 - gi|60655939|gb|AAX32533.1| excision repair cross-complementing rodent repair deficiency complementat...
238.0 [0..14] [257..52]
gi|38112299 - gi|38112299|gb|AAR11239.1| excision repair protein [Pan troglodytes]
238.0 [0..14] [257..9]
gi|61363050, gi|... - gi|61363050|gb|AAX42326.1| excision repair cross-complementing rodent repair deficiency complementat...
ERCC1 - excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes over...
238.0 [0..14] [257..52]
gi|73948160 - gi|73948160|ref|XP_855116.1| PREDICTED: similar to DNA excision repair protein ERCC-1 [Canis familia...
233.0 [0..14] [257..48]
ERCC1_MOUSE - DNA excision repair protein ERCC-1 OS=Mus musculus GN=Ercc1 PE=2 SV=2
232.0 [0..14] [257..52]
gi|16768600 - gi|16768600|gb|AAL28519.1| GM10122p [Drosophila melanogaster]
230.0 [0..16] [259..1]

Back

Predicted Domain #1
Region A:
Residues: [1-186]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDFDDDSFN DVLGAMEMPT AAKQPKVDAP AATAVNPAPS NSTEPSGSGR PAPGKPASNP  60
   61 HCVLVHSKQR GNPILKSILN VPLEFRDDIV PDYVVGRTSC VLYLSLKYHN LNPDYICQRL 120
  121 KALGKMYELR VLLVQVDTPE PNNALKSLTR ISLLADLTMM LAWNAEEAGK IIETYKQFEK 180
  181 RPPDLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.69897
Match: 2a1iA
Description: Crystal Structure of the Central Domain of Human ERCC1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [187-259]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERVESNPHQ KLLAALTNIK PVNKTDAAAL LHTFGNLGNI INASEERLSQ VMGLGPRKAK  60
   61 KLYKTLQEPF LSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.522879
Match: 2a1jB
Description: Crystal Structure of the Complex between the C-Terminal Domains of Human XPF and ERCC1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle