YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: L-PA
Organism: Drosophila melanogaster
Length: 562 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for L-PA.

Description E-value Query
Range
Subject
Range
gi|54635766, gi|... - gi|54635766|gb|EAL25169.1| GA10079 [Drosophila pseudoobscura pseudoobscura], gi|125807997|ref|XP_001...
gi|54635766|gb|E... - GA10079-PA [Drosophila pseudoobscura], GA10079 [Drosophila pseudoobscura pseudoobscura]
519.0 [0..1] [562..1]

Back

Predicted Domain #1
Region A:
Residues: [1-189]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLISCKCSNF VASTSKLQRS NSSSGAGGRV GGAEVASGEV PTAILLSQVF QQKYPLDFVF  60
   61 YSHIMEFFKH AYGPIPDLTV AVINQRELLY GLTLEAAGQS WQLSLCINCK EVLCAKRLTA 120
  121 GAGATPTLYL INCTLLTSSE ELAQRKSNKA FSETFELLIM DHTGSDSGST RPTSGLSNSA 180
  181 SSLSIGSLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [190-437]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNPTDARVQR LRMIQAHQQA RLQEEIVETN ERIERYTRTQ FQLLNSFREK SDQDCALLFK  60
   61 VIRALPEQAS ELLDRAMLPA LDVAANQPQS ATARRRNTIS SRRELNGGPT TPTTTLTHPP 120
  121 NFLSLNQQPQ QQLLAQQQQQ QLQAQQQQQQ QAPQSVSMAR KMSHFDTPPA TPEATPMSVG 180
  181 NSPTFRQQSA AGGAGGPPTQ TLTPNGVGQS SVNEDADDCL FDLEDVDAPV PVQSVPVPSY 240
  241 TRSLIYQQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [438-562]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPQHNPFQQL SQQNGLRSVL DDEAADEAED ALDPDSSISI PVRGGGRPSH AQLMNFARSL  60
   61 PIEIANTTLA ERAAVANNNN FGQGCEEGMD NIDIAASIQA LTRSVHGEAV FGDLPRPRLR 120
  121 SQIEG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle