YRC Public Data Repository - Protein Structure Prediction

Protein:	Roe1-PA
Organism:	Drosophila melanogaster
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Roe1-PA.

Description	E-value	Query Range	Subject Range
gi\|20151765 - gi\|20151765\|gb\|AAM11242.1\| RE56495p [Drosophila melanogaster]	194.0	[0..1]	[213..1]
GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii GN=mge1 PE=3 SV=1 GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /...	186.0	[0..46]	[212..42]
gi\|83632128, gi\|... - gi\|83644085\|ref\|YP_432520.1\| molecular chaperone GrpE (heat shock protein) [Hahella chejuensis KCTC ...	176.0	[0..19]	[212..93]
GRPE_SINMW - Protein GrpE OS=Sinorhizobium medicae (strain WSM419) GN=grpE PE=3 SV=1	174.0	[0..11]	[212..1]
gi\|78389205, gi\|... - gi\|78493664\|ref\|ZP_00845896.1\| GrpE protein [Rhodopseudomonas palustris BisB18], gi\|78389205\|gb\|EAP1...	174.0	[0..63]	[212..86]
GRPE_BRUSU - Protein GrpE OS=Brucella suis biovar 1 (strain 1330) GN=grpE PE=3 SV=1 gi\|225640069, gi... - gi\|225851704\|ref\|YP_002731937.1\| Protein grpE [Brucella melitensis ATCC 23457], gi\|225640069\|gb\|ACN9... gi\|225626709, gi... - gi\|225626709\|ref\|ZP_03784748.1\| Protein grpE [Brucella ceti str. Cudo], gi\|225618366\|gb\|EEH15409.1\| ... gi\|254705347 - gi\|254705347\|ref\|ZP_05167175.1\| heat shock protein GrpE [Brucella suis bv. 3 str. 686] gi\|254700976 - gi\|254700976\|ref\|ZP_05162804.1\| heat shock protein GrpE [Brucella suis bv. 5 str. 513] gi\|254709317 - gi\|254709317\|ref\|ZP_05171128.1\| heat shock protein GrpE [Brucella pinnipedialis B2/94] GRPE_BRUSU - Protein grpE OS=Brucella suis GN=grpE PE=3 SV=1 GRPE_BRUC2 - Protein GrpE OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=grpE PE=3 SV=1	173.0	[0..1]	[212..1]
gi\|17983809, gi\|... - gi\|17988060\|ref\|NP_540694.1\| heat shock protein GrpE [Brucella melitensis 16M], gi\|17983809\|gb\|AAL52... gi\|25311554 - pir\|\|AC3474 grpE protein [imported] - Brucella melitensis (strain 16M)	173.0	[0..55]	[212..1]
gi\|90420648, gi\|... - gi\|90420648\|ref\|ZP_01228554.1\| grpE chaperone protein [Aurantimonas sp. SI85-9A1], gi\|90334939\|gb\|EA... gi\|90420648, gi\|... - gi\|90420648\|ref\|ZP_01228554.1\| grpE chaperone protein [Aurantimonas sp. SI85-9A1], gi\|90334939\|gb\|EA...	172.0	[0..60]	[212..66]
gi\|189023421, gi... - gi\|189023421\|ref\|YP_001934189.1\| GrpE protein [Brucella abortus S19], gi\|189018993\|gb\|ACD71715.1\| Gr... gi\|254694961 - gi\|254694961\|ref\|ZP_05156789.1\| heat shock protein GrpE [Brucella abortus bv. 3 str. Tulya] gi\|254696592 - gi\|254696592\|ref\|ZP_05158420.1\| heat shock protein GrpE [Brucella abortus bv. 2 str. 86/8/59] gi\|237814640, gi... - gi\|237814640\|ref\|ZP_04593638.1\| Protein grpE [Brucella abortus str. 2308 A], gi\|237789477\|gb\|EEP6368... gi\|254690472 - gi\|254690472\|ref\|ZP_05153726.1\| heat shock protein GrpE [Brucella abortus bv. 6 str. 870] gi\|254731505 - gi\|254731505\|ref\|ZP_05190083.1\| heat shock protein GrpE [Brucella abortus bv. 4 str. 292] GRPE_BRUME - Protein GrpE OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=grpE PE=3 SV... gi\|82699086 - gi\|82699086\|ref\|YP_413660.1\| GrpE protein [Brucella melitensis biovar Abortus 2308] GRPE_BRUME - Protein grpE OS=Brucella melitensis GN=grpE PE=3 SV=2 gi\|82615187 - gi\|82615187\|emb\|CAJ10126.1\| GrpE protein [Brucella melitensis biovar Abortus 2308] gi\|62195279, gi\|... - gi\|62289147\|ref\|YP_220940.1\| GrpE, heat shock protein [Brucella abortus bv. 1 str. 9-941], gi\|621952...	172.0	[0..1]	[212..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKAALPLQ MFGRRLVHLR SSVTSQNMSA LRLYSTEKQP EEATEQKATE SSPEVEKLTK  60
   61 ELAAAKEQNA ELMDKYKRSL ADSENMRNRL NKQISDAKIF GIQSFCKDLL EVADTLGHAT 120
  121 QAVPKDKLSG NADLKNLYEG LTMTRASLLQ VFKRHGLEPL DPINQKFDPN QHEALFQKED 180
  181 KTVEPNTVVE VTKLGYKLHE RCIRPALVGV SKC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.39794
Match:	1dkgA
Description:	Head domain of nucleotide exchange factor GrpE; Coiled-coil domain of nucleotide exchange factor GrpE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits