YRC Public Data Repository - Protein Structure Prediction

Protein:	bic-PA, bic-PB
Organism:	Drosophila melanogaster
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bic-PA, bic-PB.

Description	E-value	Query Range	Subject Range
gi\|89268303 - gi\|89268303\|emb\|CAJ82851.1\| basic transcription factor 3 [Xenopus tropicalis]	289.0	[0..1]	[157..53]
BTF3_MOUSE - Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=1 SV=3	279.0	[0..1]	[157..48]
gi\|109476985 - gi\|109476985\|ref\|XP_001067412.1\| PREDICTED: similar to basic transcription factor 3-like 4 [Rattus n...	276.0	[0..1]	[157..126]
gi\|109077564 - gi\|109077564\|ref\|XP_001100404.1\| PREDICTED: basic transcription factor 3 isoform 2 [Macaca mulatta]	276.0	[0..1]	[157..50]
gi\|208965864 - gi\|208965864\|dbj\|BAG72946.1\| basic transcription factor 3 [synthetic construct] BTF3 - basic transcription factor 3 gi\|55624114 - gi\|55624114\|ref\|XP_517710.1\| PREDICTED: basic transcription factor 3 isoform 3 [Pan troglodytes]	275.0	[0..1]	[157..50]
gi\|149726547 - gi\|149726547\|ref\|XP_001504740.1\| PREDICTED: similar to rCG44623 isoform 2 [Equus caballus] gi\|58760394, gi\|... - gi\|70778873\|ref\|NP_001020485.1\| basic transcription factor 3 [Bos taurus], gi\|58760394\|gb\|AAW82107.1...	273.0	[0..1]	[157..6]
gi\|60652869, gi\|... - gi\|60652871\|gb\|AAX29130.1\| basic transcription factor 3 [synthetic construct], gi\|60652869\|gb\|AAX291...	273.0	[0..1]	[157..6]
gi\|27686915, gi\|... - gi\|56605700\|ref\|NP_001008310.1\| basic transcription factor 3 [Rattus norvegicus], gi\|55154111\|gb\|AAH... gi\|29507, gi\|395... - gi\|395087\|emb\|CAA52200.1\| transcription factor BTF3 [Homo sapiens], gi\|30583079\|gb\|AAP35784.1\| basic... gi\|542159224\|ref... - PREDICTED: transcription factor BTF3 [Zonotrichia albicollis] tr\|U3KMX6\|U3KMX6... - Transcription factor BTF3 OS=Oryctolagus cuniculus GN=BTF3 PE=3 SV=1 gi\|74137908, gi\|... - gi\|74226885\|dbj\|BAE27087.1\| unnamed protein product [Mus musculus], gi\|74151231\|dbj\|BAE27735.1\| unna... gi\|114599709 - gi\|114599709\|ref\|XP_001152428.1\| PREDICTED: similar to general transcription factor isoform 2 [Pan t... gi\|60655957, gi\|... - gi\|60655959\|gb\|AAX32543.1\| basic transcription factor 3 [synthetic construct], gi\|60655957\|gb\|AAX325... gi\|109077568 - gi\|109077568\|ref\|XP_001100502.1\| PREDICTED: basic transcription factor 3 isoform 3 [Macaca mulatta]	272.0	[0..1]	[157..6]
gi\|147903121, gi... - gi\|54038475\|gb\|AAH84435.1\| LOC495200 protein [Xenopus laevis], gi\|147903121\|ref\|NP_001088356.1\| hypo...	271.0	[0..1]	[157..6]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAEKLKKLQ AQVRIGGKGT PRRKKKIVHS TPATDDKKLQ SSLKKLSVNT IPGIEEVNII  60
   61 KNDGTVIHFN NPKAQASLPT NTFAITGHGE NKTITEMVPG ILTQLGPQDI NQLKKLATEI 120
  121 ASKSGAGGAA GSSAADAGDD DVPDLVENFE EVAIADTKEE KSGEVAASA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.187087
Match:	PF01849.9
Description:	No description for PF01849.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits