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View Structure Prediction Details

Protein: achi-PA
Organism: Drosophila melanogaster
Length: 426 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for achi-PA.

Description E-value Query
Range
Subject
Range
gi|220952504, gi... - gi|220952504|gb|ACL88795.1| vis-PA [synthetic construct], gi|220942292|gb|ACL83689.1| vis-PA [synthe...
vis-PA - The gene vismay is referred to in FlyBase by the symbol Dmel\vis (CG8821, FBgn0033748). It is a prot...
268.0 [0..1] [426..1]

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Predicted Domain #1
Region A:
Residues: [1-68]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISPEQEEVN MVLDRHVRQN IQDMMHEAHV QASLLENEGR GRFHSDSSLD QDSLHADVIV  60
   61 EEDQSTEH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [69-170]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GANQVQNYHD MMVDSEHHID INGSLRKRRG NLPKTSVKIL KRWLYEHRYN AYPSDAEKFT  60
   61 LSQEANLTVL QVCNWFINAR RRILPEMIRR EGNDPLHFTI SR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 2dmnA
Description: No description for 2dmnA was found.

Predicted Domain #3
Region A:
Residues: [171-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGKKVSPNCS RSSALGANLT GPNPAHGSPA SEVVVGATEE VDGAGEIHEG IANVLTNFEQ  60
   61 YVQGPNGQMV KMEPEYEDSV IYRSEGEESA QGYESCGPNS EEEVRFETSH DWQSVIKTVF 120
  121 GTEEVSTSAG NNPGTSGSKG SVQNTAIWNR NQTAKRDVNQ QLTDFESELN RIQASEIQTI 180
  181 DPTNSNQQDI GDNLQADEVF TGAEAEAGQS QLSAMSQGTS PDERAKYKCL YYLVETAMAV 240
  241 RQNDDVQDDD FVYMGD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle