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View Structure Prediction Details

Protein: CG8831-PA
Organism: Drosophila melanogaster
Length: 610 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8831-PA.

Description E-value Query
Range
Subject
Range
gi|194390170 - gi|194390170|dbj|BAG61847.1| unnamed protein product [Homo sapiens]
gi|114594151 - gi|114594151|ref|XP_001150700.1| PREDICTED: nucleoporin 54kDa isoform 2 [Pan troglodytes]
439.0 [0..192] [609..37]

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Predicted Domain #1
Region A:
Residues: [1-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFGSNTSL GATSTPAKTT GGLFGSPFGG TAATSQPAPA FGAQATSTPA FGAQPATSAF  60
   61 GAGSAFGATA AAPAFGAATG TSAFGGSAFG STPAFGAATT TTAGTGLGGG GFGGFGAAPA 120
  121 TSQAGLFGAP ATSAAPPAFS GFGQQAAAST APASGFSGFG TTTTSAPAFG GFGTSQSTGF 180
  181 GGGAFGSTFG KPANTTVTPG FGGFGGTSFM LGQPQQQPAP ISADEAFAQS ILNVSIFGDE 240
  241 RDKIVAKWNY LQATWGTGKM FYSQSAAPVD ITPENVMCRF KAIGYSRMPG KDNKLGLVAL 300
  301 NFCRELSAVK PHQQQVIQTL HSLFGSKPNM LVHIDSIKEL ENKKCQIVIY VEEKLQHAPN 360
  361 ES

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.09691
Match: 1y0fB
Description: No description for 1y0fB was found.

Predicted Domain #2
Region A:
Residues: [363-610]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRILATELSN YLNQATLKPQ LNNLGVVEAL ALVLPDEDQL REYLENPPRG VDPRMWRQAN  60
   61 SDNPDPTLYI PVPMVGFNDL KWRVKCQEQE TDTHALYIKK VESELTELKK RHATATAKIL 120
  121 EHKRKLAELS HRILRIIVKQ ECTRKVGTSL TPEEEALRTK LQNMLAVVSA PTQFKGRLSE 180
  181 LLSQMRMQRN QFAANGGAEY ALDKEAEDEM KTFLTMQQRA MEVLSDTVNK DLRALDVIIK 240
  241 GLPELRQS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.0
Match: 2tmaA
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle