YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: Sr-CII-PA, FBpp0...
Organism: Drosophila melanogaster
Length: 599 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Sr-CII-PA, FBpp0....

Description E-value Query
Range
Subject
Range
gi|58613675 - gi|58613675|gb|AAW79424.1| SR-CII [Drosophila melanogaster]
474.0 [0..1] [599..1]

Back

Predicted Domain #1
Region A:
Residues: [1-454]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFFLALTLI LAYSLDTANG SCEGSLDLEN GRFFTRSNNL VIFQCNRGFV LQGNSIHTCD  60
   61 RDGRLREKKP FCARKGCDKP EDPTNGYVLD NPVKAEIVCL DGFVLYGSRT AFCDGEKWST 120
  121 QLGACRRSNH TMDHSCDFES EDQCGWSAEE TIWLPWKRIS AVTDFHHPRT GPRYDHTFGN 180
  181 TSGGHYMRME TQIEAYGSYH FVSPVYPRSL CLNVACCFRF HYFMFGAGVD RLVLSVKPAS 240
  241 LQIDDMWNSF RSNSSKFEIT GSQGTHWLEN TITIDKMHED FQVVFTATDA RSQFGDIAID 300
  301 DVKLMTGSEC GVDGYSTTTT TESASSAMSS SEEPLVFDMM SCTFRCGSIS PGSPLFSDEG 360
  361 IVMSCGCDDS CILNNNCCPN YFEKCVKELD IGSNVFLNSA NTTTTSISRN TTTEKVFSIS 420
  421 LEASRSFTTP RTSTNSTTFP RTQISTKKLL NTHE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.522879
Match: 2q7zA
Description: No description for 2q7zA was found.

Predicted Domain #2
Region A:
Residues: [455-599]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLTETSTIPT RNKKLSQPSI FSSQHITVTT TTDRSRKDYH EDIAGQLDMN TNIPHPALIV  60
   61 MYLLIGVILV IVVANLKQLC KILSKNSSRD NEKVVSFKKA FEGLRKPRRL SQNCNGMDQH 120
  121 LCSAFDEDLD YFEDMDMNIR MVTDL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle