YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: Fpps-PA
Organism: Drosophila melanogaster
Length: 419 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Fpps-PA.

Description E-value Query
Range
Subject
Range
gi|194113551, gi... - gi|195153687|ref|XP_002017755.1| GL17346 [Drosophila persimilis], gi|194113551|gb|EDW35594.1| GL1734...
gi|125810640, gi... - gi|54636732|gb|EAL26135.1| GA11601 [Drosophila pseudoobscura pseudoobscura], gi|125810640|ref|XP_001...
gi|54636732|gb|E... - GA11601-PA [Drosophila pseudoobscura], GA11601 [Drosophila pseudoobscura pseudoobscura]
356.0 [0..1] [419..1]

Back

Predicted Domain #1
Region A:
Residues: [1-419]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKLARMLLP QQRILASPLR LQRLISTSDE VNAEPIIKSM DTIGGLPTEL VNEQKLKKTS  60
   61 RTLSTLQNHS VPIAARVTVS KDESRDFMAV FPDLVRDITT VTKAYNCSDA AKWFAQVLQY 120
  121 NVPRGKKNRG ILTVLTYKNL VPTQDLTPEN IKLAQYLGWC VEMLQSFFII SDDVMDNSTT 180
  181 RRGQPCWHKV ENVGLTAIND ALMIENAMYA ILKKHFSHLD CYVALMELFH EITYITTCGQ 240
  241 SLDQLNSNRC VSEFTMENYK AIVENKTAYY SFYLPFALAL HLAGYKDAEA FRQSKTILLE 300
  301 MGNFFQVQDD FLDCFGNPEV TGKIGTDIQD NKCSWLAVVA MQRANVEQKQ IMVDCYGKEE 360
  361 PAKVERVKEL YKELGLPSTY AIFEEESYNM IKTHIQQTSR GVPHQTFLQI LNKIYQRDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.69897
Match: 1ubxA
Description: STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHETASE
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle