YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: mms4-PA
Organism: Drosophila melanogaster
Length: 309 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mms4-PA.

Description E-value Query
Range
Subject
Range
gi|76644301 - gi|76644301|ref|XP_873123.1| PREDICTED: similar to essential meiotic endonuclease 1 homolog 1 isofor...
293.0 [0..3] [309..226]

Back

Predicted Domain #1
Region A:
Residues: [1-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKVDKLHK QALREQQKRI KPGECMKYVR MVIDAGFLGI PVGQEALQQL NATGLKYEIR  60
   61 SLPVSHCILW ERNVGQQTIA LGSSPTGLDE AWKSENQVVQ WLSESSFQRA VKDQSLVCLG 120
  121 PRLQDSFPDC QYTIALPTLR HSKHGSSSSQ DALIEMQLLQ ELHVEQLDQP ESQDLVALLQ 180
  181 RYTKAIAEAP YKKQRNETLG GFKKYLANDK KQCVRVDQGN GYGRLWQQHL NRLPMVTLEV 240
  241 AESIIAQYPC PKKLIDHFSS DPLAVQSLAD LKIKRCNGPQ PLHTERRIGN VLSNKLYTLY 300
  301 TAKDPNTLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.39794
Match: 2bgwA
Description: XPF from Aeropyrum pernix, complex with DNA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.286388432783973 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle