YRC Public Data Repository - Protein Structure Prediction

Protein:	Jra-PB, Jra-PA
Organism:	Drosophila melanogaster
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Jra-PB, Jra-PA.

Description	E-value	Query Range	Subject Range
gi\|157774, gi\|22... - pir\|\|TVFFJD transforming protein jun-D - fruit fly (Drosophila melanogaster), gi\|2276227\|emb\|CAA731...	151.0	[0..1]	[289..1]
gi\|114581857 - gi\|114581857\|ref\|XP_001152057.1\| PREDICTED: chimerin (chimaerin) 1 isoform 6 [Pan troglodytes]	124.0	[0..10]	[278..151]
gi\|54636274, gi\|... - gi\|54636274\|gb\|EAL25677.1\| GA15338-PA [Drosophila pseudoobscura], gi\|125809404\|ref\|XP_001361101.1\| G...	120.0	[0..47]	[283..49]
gi\|73956228 - gi\|73956228\|ref\|XP_865668.1\| PREDICTED: similar to Transcription factor AP-1 (Activator protein 1) (...	117.0	[0..35]	[289..27]
gi\|81617, gi\|16290 - pir\|\|S20885 G-box-binding factor 3 - Arabidopsis thaliana (fragment), gi\|16290\|emb\|CAA45358.1\| G-box...	114.0	[0..15]	[278..1]
gi\|115304969, gi... - gi\|118150774\|ref\|NP_001071295.1\| jun oncogene [Bos taurus], gi\|115304969\|gb\|AAI23754.1\| Jun oncogene...	112.0	[0..35]	[289..27]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTPVSAAAN LSIQNAGSSG ATAIQIIPKT EPVGEEGPMS LDFQSPNLNT STPNPNKRPG  60
   61 SLDLNSKSAK NKRIFAPLVI NSPDLSSKTV NTPDLEKILL SNNLMQTPQP GKVFPTKAGP 120
  121 VTVEQLDFGR GFEEALHNLH TNSQAFPSAN SAANSAANNT TAAAMTAVNN GISGGTFTYT 180
  181 NMTEGFSVIK DEPVNQASS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	96.356547
Match:	PF03957.4
Description:	No description for PF03957.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [200-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTVNPIDMEA QEKIKLERKR QRNRVAASKC RKRKLERISK LEDRVKVLKG ENVDLASIVK  60
   61 NLKDHVAQLK QQVMEHIAAG CTVPPNSTDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.39794
Match:	1fosF
Description:	C-jun
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits