YRC Public Data Repository - Protein Structure Prediction

Protein:	TER94-PB
Organism:	Drosophila melanogaster
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TER94-PB.

Description	E-value	Query Range	Subject Range
gi\|91688491, gi\|... - gi\|91784537\|ref\|YP_559743.1\| FtsH peptidase [Burkholderia xenovorans LB400], gi\|91688491\|gb\|ABE31691...	270.0	[0..2]	[296..185]
gi\|77966655, gi\|... - gi\|78065910\|ref\|YP_368679.1\| FtsH peptidase [Burkholderia sp. 383], gi\|77966655\|gb\|ABB08035.1\| FtsH ...	269.0	[0..2]	[296..185]
gi\|67536603, gi\|... - gi\|67542324\|ref\|ZP_00420261.1\| Peptidase M41, FtsH [Burkholderia vietnamiensis G4], gi\|67536603\|gb\|E...	269.0	[0..2]	[296..185]
gi\|169815860, gi... - gi\|170732618\|ref\|YP_001764565.1\| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3]... gi\|67103320, gi\|... - gi\|67663185\|ref\|ZP_00460469.1\| Peptidase M41, FtsH [Burkholderia cenocepacia HI2424], gi\|67103320\|gb... gi\|67096114, gi\|... - gi\|67656453\|ref\|ZP_00453836.1\| Peptidase M41, FtsH [Burkholderia cenocepacia AU 1054], gi\|67096114\|g...	269.0	[0..2]	[296..185]
gi\|167910442 - gi\|167910442\|ref\|ZP_02497533.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 112] gi\|167902200 - gi\|167902200\|ref\|ZP_02489405.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei NCTC 1... gi\|148027962, gi... - gi\|254358835\|ref\|ZP_04975108.1\| cell division protein FtsH [Burkholderia mallei 2002721280], gi\|1945... gi\|194313309, gi... - gi\|254177646\|ref\|ZP_04884301.1\| cell division protein FtsH [Burkholderia mallei ATCC 10399], gi\|1943... gi\|194529197, gi... - gi\|254205764\|ref\|ZP_04912116.1\| cell division protein FtsH [Burkholderia mallei JHU], gi\|194529197\|r... gi\|167918468 - gi\|167918468\|ref\|ZP_02505559.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei BCC215... gi\|254199451, gi... - gi\|254199451\|ref\|ZP_04905817.1\| cell division protein FtsH [Burkholderia mallei FMH], gi\|194525037\|r... gi\|167815247 - gi\|167815247\|ref\|ZP_02446927.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 91] gi\|134245973, gi... - gi\|134282887\|ref\|ZP_01769590.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305], ... gi\|167738063 - gi\|167738063\|ref\|ZP_02410837.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 14] gi\|76811845, gi\|... - gi\|76811845\|ref\|YP_333019.1\| cell division protein FtsH [Burkholderia pseudomallei 1710b], gi\|765812... gi\|124294473, gi... - gi\|124386453\|ref\|YP_001026575.1\| cell division protein FtsH [Burkholderia mallei NCTC 10229], gi\|124... gi\|167893752 - gi\|167893752\|ref\|ZP_02481154.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 7894] gi\|237505527, gi... - gi\|237811779\|ref\|YP_002896230.1\| cell division protease FtsH [Burkholderia pseudomallei MSHR346], gi... gi\|53718995, gi\|... - gi\|53718995\|ref\|YP_107981.1\| FtsH endopeptidase [Burkholderia pseudomallei K96243], gi\|52209409\|emb\|... gi\|121598236, gi... - gi\|121598236\|ref\|YP_992623.1\| cell division protein FtsH [Burkholderia mallei SAVP1], gi\|121227046\|g... gi\|167845200 - gi\|167845200\|ref\|ZP_02470708.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei B7210] gi\|238520336, gi... - gi\|238563620\|ref\|ZP_00438574.2\| cell division protease FtsH [Burkholderia mallei GB8 horse 4], gi\|23... gi\|126241357, gi... - gi\|126448487\|ref\|YP_001080140.1\| cell division protein FtsH [Burkholderia mallei NCTC 10247], gi\|126... gi\|254258466, gi... - gi\|254258466\|ref\|ZP_04949520.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1710a]... gi\|126218925, gi... - gi\|126439432\|ref\|YP_001058525.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668],... gi\|242139903, gi... - gi\|242316664\|ref\|ZP_04815680.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1106b]... gi\|167719065 - gi\|167719065\|ref\|ZP_02402301.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei DM98] gi\|126225786, gi... - gi\|126452144\|ref\|YP_001065785.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1106a... gi\|167002789, gi... - gi\|243061550\|gb\|EES43736.1\| cell division protein FtsH [Burkholderia mallei PRL-20], gi\|167002789\|re... gi\|53725545, gi\|... - gi\|53725545\|ref\|YP_102540.1\| cell division protein FtsH [Burkholderia mallei ATCC 23344], gi\|5242896... gi\|217393382, gi... - gi\|217423524\|ref\|ZP_03455025.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576], ... gi\|157936058, gi... - gi\|254188379\|ref\|ZP_04894890.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei Pasteu... gi\|254180202, gi... - gi\|254180202\|ref\|ZP_04886801.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1655],... gi\|254298036, gi... - gi\|254298036\|ref\|ZP_04965489.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e],... gi\|254198030, gi... - gi\|254198030\|ref\|ZP_04904452.1\| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13], ...	268.0	[0..2]	[296..185]
gi\|83652745, gi\|... - gi\|83718920\|ref\|YP_443288.1\| cell division protein FtsH [Burkholderia thailandensis E264], gi\|836527... gi\|167621274 - gi\|167621274\|ref\|ZP_02389905.1\| cell division protein FtsH [Burkholderia thailandensis Bt4] gi\|167582304 - gi\|167582304\|ref\|ZP_02375178.1\| cell division protein FtsH [Burkholderia thailandensis TXDOH]	268.0	[0..2]	[296..185]
gi\|124870535, gi... - gi\|84357448\|ref\|ZP_00982270.1\| COG0465: ATP-dependent Zn proteases [Burkholderia cenocepacia PC184],... gi\|105892561, gi... - gi\|107022372\|ref\|YP_620699.1\| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia AU 1054],...	268.0	[0..2]	[296..181]
gi\|115281215, gi... - gi\|74015643\|ref\|ZP_00686270.1\| Peptidase M41, FtsH [Burkholderia ambifaria AMMD], gi\|72611072\|gb\|EAO... gi\|118697255, gi... - gi\|172060241\|ref\|YP_001807893.1\| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6],...	268.0	[0..2]	[296..185]
gi\|100231118, gi... - gi\|83676081\|ref\|ZP_00937881.1\| COG0465: ATP-dependent Zn proteases [Burkholderia pseudomallei 406e],... gi\|67634437, gi\|... - gi\|67634437\|ref\|ZP_00433411.1\| COG0465: ATP-dependent Zn proteases [Burkholderia mallei 10399], gi\|1... gi\|83618789 - gi\|83618789\|ref\|ZP_00929240.1\| COG0465: ATP-dependent Zn proteases [Burkholderia mallei FMH] gi\|83621941 - gi\|83621941\|ref\|ZP_00932311.1\| COG0465: ATP-dependent Zn proteases [Burkholderia mallei JHU] gi\|67669382, gi\|... - gi\|99907761\|ref\|ZP_01315598.1\| hypothetical protein Bpse1_03005045 [Burkholderia pseudomallei 1655],... gi\|67680802, gi\|... - gi\|90290425\|ref\|ZP_01210085.1\| hypothetical protein Bpse17_02004898 [Burkholderia pseudomallei 1710a... gi\|67639737 - gi\|67639737\|ref\|ZP_00438574.1\| COG0465: ATP-dependent Zn proteases [Burkholderia mallei GB8 horse 4] gi\|67645795 - gi\|67645795\|ref\|ZP_00444071.1\| COG0465: ATP-dependent Zn proteases [Burkholderia mallei NCTC 10247] gi\|82527585 - gi\|82527585\|ref\|ZP_00886917.1\| COG0465: ATP-dependent Zn proteases [Burkholderia pseudomallei 1106a] gi\|82533573 - gi\|82533573\|ref\|ZP_00892636.1\| hypothetical protein Bpse110_02005126 [Burkholderia pseudomallei 1106... gi\|84523043 - gi\|84523043\|ref\|ZP_01010179.1\| COG0465: ATP-dependent Zn proteases [Burkholderia mallei SAVP1] gi\|100120376, gi... - gi\|67758274\|ref\|ZP_00497047.1\| COG0465: ATP-dependent Zn proteases [Burkholderia pseudomallei S13], ... gi\|67734631 - gi\|67734631\|ref\|ZP_00485737.1\| COG0465: ATP-dependent Zn proteases [Burkholderia pseudomallei 668] gi\|67752753, gi\|... - gi\|67752753\|ref\|ZP_00491716.1\| COG0465: ATP-dependent Zn proteases [Burkholderia pseudomallei Pasteu... gi\|85065050 - gi\|85065050\|ref\|ZP_01025903.1\| COG0465: ATP-dependent Zn proteases [Burkholderia mallei 10229] gi\|100263276, gi... - gi\|87314153\|ref\|ZP_01095207.1\| COG0465: ATP-dependent Zn proteases [Burkholderia mallei 2002721280],...	268.0	[0..2]	[296..175]
gi\|84361418 - gi\|84361418\|ref\|ZP_00986088.1\| COG0465: ATP-dependent Zn proteases [Burkholderia dolosa AUO158]	268.0	[0..2]	[296..173]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPSRGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVRDIFDKAR  60
   61 SAAPCVLFFD ELDSIAKARG GNVGDAGGAA DRVINQILTE MDGMGAKKNV FIIGATNRPD 120
  121 IIDPAILRPG RLDQLIYIPL PDDKSREAIL KANLRKSPLA KEVDLTYIAK VTQGFSGADL 180
  181 TEICQRACKL AIRQAIEAEI RREKERAENQ NSAMDMDEDD PVPEITSAHF EEAMKFARRS 240
  241 VSDNDIRKYE MFAQTLQQSR GFGQNFRFPG QTGNTSGSGN NLPVNSPGDN GDDDLYS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.30103
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits