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View Structure Prediction Details

Protein: gi|28573320, gi|...
Organism: Drosophila melanogaster
Length: 234 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28573320, gi|....

Description E-value Query
Range
Subject
Range
gi|1684911 - gi|1684911|gb|AAB36557.1| cyclin-dependent kinase inhibitor Dacapo [Drosophila melanogaster]
263.0 [0..1] [234..1]

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Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSARVLNPV MISEFCKMSS SPAVSRNLAC GRQLNRIKRD LFGSSKSAEG TRHQELATQK  60
   61 WGFDFRAGCP LAEKSPYIWE RVSFQESSFA PEMYTLTRAA HVRPSADASP SDMDILVNER 120
  121 SERENFGSNL VNSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.69897
Match: 1jsuC
Description: P27(KIP1) fragment 22-106
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [135-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LESNTDNESC YDSQDESLAM RLSSSSTTST SSIVLRKRQP KITEFMKERK RLAQAPKKLS  60
   61 PAKRMRTSSP SSSATSSSSS SGGFGLGAHF GAMLKRPRHN 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle