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View Structure Prediction Details

Protein: Phax-PB
Organism: Drosophila melanogaster
Length: 357 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Phax-PB.

Description E-value Query
Range
Subject
Range
gi|220958126, gi... - gi|220958126|gb|ACL91606.1| Phax-PA [synthetic construct], gi|220948712|gb|ACL86899.1| Phax-PA [synt...
gi|28573311, gi|... - ref|NP_610456.3| CG8069-PA [Drosophila melanogaster], gb|AAF58985.2| CG8069-PA, isoform A [Drosophil...
474.0 [0..1] [357..123]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRVPPTDAE MQPNRARFKK YNVWASALQE DALSENMRGC DVTRSGRDRN VENYDFSLRY  60
   61 RLNGENTLKR RLSNSSEDGG ECSHPAHKRG RPSSRPITGN QQRGLVKSRT GHRSRRGTSS 120
  121 ASGSSDFCEP RHILDLNEVG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [141-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERDPSDVATE MASKLYEEKD ELLVRVVEVL GIDVCLELYK ETQRIEADGG MMIKNGIRRR  60
   61 TPGGVFLFLI KHHDNITQEQ QKRIFSEDRQ SLSKSRKQIE TLMRDRKVEE LKKCLSKQVT 120
  121 ELPTLNQRKE YY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [273-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGDEQSEDK QPGSLSNPPP SPVGAEQEHD SPEYRTHEIN INLVDNAELP STSKAAAAAQ  60
   61 GAPLKDLISY DHDFLDVNCG DMDFF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle