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View Structure Prediction Details

Protein: sec31-PA
Organism: Drosophila melanogaster
Length: 1240 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec31-PA.

Description E-value Query
Range
Subject
Range
gi|74001769 - gi|74001769|ref|XP_849536.1| PREDICTED: similar to SEC31-like 1 isoform 1 isoform 2 [Canis familiari...
744.0 [0..1] [1237..1]

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Predicted Domain #1
Region A:
Residues: [1-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKELQKTV NIAWSPAQQQ QILLAAGTAA QQFDSNANST LELYSPNFSD ATYDLELRAS  60
   61 VSSQYKFQKL IWSPVGPHPS GLIVGGCEAG QINIYSADKL LAGKEEPLLK RQDKHTGAVS 120
  121 GLDFNPFQNN LLASCASESE ILIWDLNNPE TSMSPGTKTQ PLEDVKNVAW NRQVQHILAS 180
  181 VFSTRCVIWD LRKSQQIIKL SDSQSRVRWH AIEWHPEAAT QVWLASEDDQ APVVQLWDLR 240
  241 YATAPAKTYQ IHERGVLGMS WCLQDNDLMV SCGKDNRIYC WNPNTKIPEG EILSEVATTA 300
  301 SWYSDVQFCP RNPALIASAS LEGAVSIYSL HGGTHHLVQT ANKIADSFPG MDQFAQEPIP 360
  361 QQATQVVYHD LAHAPKWMKR PCGVAFGFGG KLVSFNGTSK TVKVQQLTT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.522879
Match: 2pm9A
Description: No description for 2pm9A was found.

Predicted Domain #2
Region A:
Residues: [410-754]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESALVDRANA LERSLVDANY SDYCRQRADE TPDQHGRYIW YFIKANFELN PKEEMLNLLG  60
   61 YNKDDIDSKF NKFIKETDGN SHSDVDTLTT RISTLTHTQD NKFDGNAIDS QNHNDFATPP 120
  121 RPQFKVPSGD HSDSLIAEAI LTGNVDAAVE LCLEAQRIPE ALIIASTAGI ETLNRTQTRY 180
  181 LLQQKNELSH VISALVSRDW LDFVNRCTVD SWKEALVAAL KHSERKVVDI CERLGDRLLS 240
  241 ECASSAEFTR NAMLCYICAG SIDKLVTAWY QLKRLEQQNP GYKPNTTELQ DLAEMVMLMC 300
  301 KSLEQQGISV DLAGRFAGFL TEYGGLLASQ GALTAALQYI TTLGG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.522879
Match: 2pm7A
Description: No description for 2pm7A was found.

Predicted Domain #3
Region A:
Residues: [755-1154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAAASESDVL QSLRDRINNA VNLDYTQPQA AVAAAPHGYQ PTRGRGSFSQ PQPSAPMPYG  60
   61 QPPNQYAQPS WPAQVPPLQT SYPGAQQPQA PPQIFNPQPV KPEPLAQPPR PLSNASSSGG 120
  121 PPPAGGASSS GGSGLSGRSK YVLDPSVAAP TSSYGMPYNP VPAPVPSAVP FGGGGVPGPA 180
  181 PQPASVPTYN SNAFNTNPIA AAQPYNPSPL MPAQQNQFVP GVNPIETMPP PAVPPVIQNV 240
  241 QRNPTPPPGW NDPPALKSSR APKPKPVVEP SAAIFHPLFP VDPNQNQNGY VDPSQYQHAA 300
  301 PLGGVPNTYY NPAAFNNNPQ QQQQHQQSYL QPQQPAPGIQ QPNWQGQQQT IGYTEQPAPI 360
  361 QQQRQPAPPK EKPPLPEEYI YLQTVLEELK NRCLGATNDP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.221849
Match: 1y0fB
Description: No description for 1y0fB was found.

Predicted Domain #4
Region A:
Residues: [1155-1240]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTKRKFVDVV KRLENLYDCL RDGKLTPTTV QYLNQIVQYI QISDYANAME IHTQIAFGTD  60
   61 FAQCAGFMQG LKVLLQSASE LQLVLR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.969
Match: 1dvkA
Description: Functional domain of the splicing factor Prp18
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle