YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: pnut-PA, pnut-PB
Organism: Drosophila melanogaster
Length: 539 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pnut-PA, pnut-PB.

Description E-value Query
Range
Subject
Range
gi|2133645, gi|7... - sp|P40797|PNUT_DROME Peanut protein, gi|508229|gb|AAA19603.1| Peanut, pir||A54294 cell division con...
492.0 [0..1] [539..1]

Back

Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSPRSNAVN GGSGGAISAL PSTLAQLALR DKQQAASASA SSATNGSSGS ESLVGVGGRP  60
   61 PNQPPSVPVA ASGKLDTSGG GASNGDSNKL THDLQEKEHQ QAQKPQKPPL PVRQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [115-539]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPMEIAGYVG FANLPNQVYR KAVKRGFEFT LMVVGASGLG KSTLINSMFL SDIYNAEQYP  60
   61 GPSLRKKKTV AVEATKVMLK ENGVNLTLTV VDTPGFGDAV DNSNCWVPIL EYVDSKYEEY 120
  121 LTAESRVYRK TISDSRVHCC LYFIAPSGHG LLPLDIACMQ SLSDKVNLVP VIAKADTMTP 180
  181 DEVHLFKKQI LNEIAQHKIK IYDFPATLED AAEEAKTTQN LRSRVPFAVV GANTIIEQDG 240
  241 KKVRGRRYPW GLVEVENLTH CDFIALRNMV IRTHLQDLKD VTNNVHYENY RCRKLSELGL 300
  301 VDGKARLSNK NPLTQMEEEK REHEQKMKKM EAEMEQVFDM KVKEKMQKLR DSELELARRH 360
  361 EERKKALELQ IRELEEKRRE FEREKKEWED VNHVTLEELK RRSLGANSST DNVDGKKEKK 420
  421 KKGLF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 110.0
Match: 2qagC
Description: No description for 2qagC was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle