YRC Public Data Repository - Protein Structure Prediction

Protein:	CG17985-PA
Organism:	Drosophila melanogaster
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17985-PA.

Description	E-value	Query Range	Subject Range
gi\|125810174, gi... - gi\|54636560\|gb\|EAL25963.1\| GA14754-PA [Drosophila pseudoobscura], gi\|125810174\|ref\|XP_001361385.1\| G...	197.0	[0..20]	[271..15]
gi\|31874036 - gi\|31874036\|emb\|CAD97936.1\| hypothetical protein [Homo sapiens]	172.0	[0..16]	[259..64]
gi\|114599207 - gi\|114599207\|ref\|XP_517659.2\| PREDICTED: hypothetical protein [Pan troglodytes]	169.0	[0..16]	[259..180]
gi\|109078012 - gi\|109078012\|ref\|XP_001086208.1\| PREDICTED: similar to LysM, putative peptidoglycan-binding, domain ...	168.0	[0..16]	[259..134]
gi\|116127717, gi... - gi\|118786088\|ref\|XP_315125.3\| ENSANGP00000015234 [Anopheles gambiae str. PEST], gi\|116127717\|gb\|EAA1...	166.0	[0..44]	[268..8]
gi\|76660080 - gi\|76660080\|ref\|XP_869935.1\| PREDICTED: hypothetical protein [Bos taurus]	165.0	[0..16]	[259..103]
gi\|73952301 - gi\|73952301\|ref\|XP_546030.2\| PREDICTED: similar to LysM, putative peptidoglycan-binding, domain cont...	164.0	[0..16]	[259..25]
LYSM3_RAT - LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Rattus norvegicus GN=Lysmd3 P...	159.0	[0..16]	[259..25]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRNARQQQH NQEEIGPDDV EDIFARPAYD DDEFEDLLPL ARRPNGHARL GRYENTLEVK  60
   61 VQEGDTLQAL ALRFHSSVAD IKRLNKIDRE NEIHAHRVIR IPVTVHNVLL GNGGLEALPA 120
  121 VHRSGNNSPR HNIEREPAPE RNPLEDARQM LDERLLVAAV NASGAVDHEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.0
Match:	2djpA
Description:	No description for 2djpA was found.

Predicted Domain #2

Region A:
Residues: [171-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSTSRAAGQF YEGAQGAPND EANMEQPYEE NAALLNHMVD RHAPLVRPIP GPSLSAIDWS  60
   61 GSDCDLSWIC LLIFILALCV VIPLVYVIYL AEHPHHNHSA Q

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits