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View Structure Prediction Details

Protein: scra-PB
Organism: Drosophila melanogaster
Length: 1239 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for scra-PB.

Description E-value Query
Range
Subject
Range
scra-PA - The gene scraps is referred to in FlyBase by the symbol Dmel\scra (CG2092, FBgn0261385). It is a pro...
671.0 [0..1] [1239..1]

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Predicted Domain #1
Region A:
Residues: [1-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPFTQHMLE KAEQRSRALG ISNASKFPLV ECSVPSSSAT SASGGDAGVL APRSRSPGGQ  60
   61 SAASGGGKVV TLGKATLEAS PAKPLRHYTA VNKENLDMGI EINITTDKPI GVQVEIQEQE 120
  121 VTDDEEQAEG GALNPLLEAE PVNQPLARLR DTSRSRLQRM GALYSNTDDL SSPIHRTEGQ 180
  181 FHVTTGEEED C

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [192-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNRSSRQPKQ RLGKLAALAD TINQWEDDTS HHEVHRLLEA PPPKPHLSSR RAEKGPAPLP  60
   61 PKKDEVDEAS RTKQLKWDPK VLSSLEAQGF QRRESSTIKH TYDYAKQEEA APASKV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [308-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDAVLTAKPP VPQKSTTVSQ VAKNFASSAP APKPAPAPAV SVKSGLVSGR AALFENKGTG  60
   61 GQSQGLRNQK DPCELSLKER MK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [390-491]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFETGNNKAM LPMAPIGSAP SITQIRAEEV KQHLAAMHPV TAAAATTVVA ATKPKQENKL  60
   61 RDKVAALVAN AQSSAETRIK DIDRQRQEDM QIISNRFNKQ KE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [492-711]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFDNQPSDSS VAAQARPPAP APSRVVRPMP PPPPPPIAAL SPGLASSKRR SPGDAPTTDE  60
   61 DSKRARKSHS DRLYPALSDL DSSGDNCCAA ETASATDDSH QQDEEETESC MDESDDQSQT 120
  121 EDSSAGMCNG SLGREIMSAV QRNEVEMQQQ QTGKKTVRYA DQDMYYDDSS LNSSQVSAGI 180
  181 DDYLDEALVE DYGSTQDDQS DSGDEQNASR LSLGSKGTTA 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [712-941]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNSFSFRKNP ASICTPIEEH HEMEMDLQTP LLSGAQPVKS ELSVNQDNDN LVTLVHTVSF  60
   61 YRRQQSANSS NSTPVRKICR EQQVMRSALA GDCHAKHRLE YDSPQQSDYV AAATDIADQT 120
  121 DEDDEEMQNA REVNDASQAQ DKIKKLLSEV CKQQQVIGQA SQALNLCAAT VEFSGSTESV 180
  181 EGERYLLLAT HRRQACLDEV QRLRVENSIR PVGAPKEKGL LTVKDITIPL 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [942-1039]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQEYVRKMAS NNINGHHLVC LLKYNEHVLA TKTVPTMPGL LSVKFPDVLQ LNNVYADFRI  60
   61 TLEIYGMLAQ RDQLPHELKY HINLNKKGGI KTPKKKGG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1040-1239]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENRLVMPPVQ SPAGPHVVRT PQLVQYGFAI FSLREIQRTT WTLTQVLGVS PLEGVVHMKV  60
   61 NCELSVSVEY KGFLTMFEDI SGFGAWHRRW CYLNGSVINY WKYPDDEKRK TPMGSIDLNS 120
  121 CTSQKVTTAP RDICARLNTM LLECERPALE TDQESLIIVP NGRTTTVRHL LSADTKEERE 180
  181 EWCAYLNKAL TLLRAWGTTH 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.522879
Match: 2yryA
Description: No description for 2yryA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle