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View Structure Prediction Details

Protein: didum-PC
Organism: Drosophila melanogaster
Length: 1800 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for didum-PC.

Description E-value Query
Range
Subject
Range
gi|7441410, gi|4... - pir||T13939 myosin V - fruit fly (Drosophila melanogaster), gi|4092802|gb|AAC99496.1| myosin V [Dros...
972.0 [0..1] [1800..1]

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Predicted Domain #1
Region A:
Residues: [1-1064]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEEMLYAQ GAKIWVPHAD LVWESATLEE SYRKGAGFLK ICTDSGKLKE VKLKADGSDL  60
   61 PPLRNPAILV GQNDLTTLSY LHEPGVLHNL RVRFCERQII YTYCGIILVA INPYAEMPLY 120
  121 GPSIIRAYRG HAMGDLEPHI FALAEEAYTK LERENCNLSI IVSGESGAGK TVSAKYAMRY 180
  181 FAAVGGSESE TQVERKVLAS SPIMEAFGNA KTTRNDNSSR FGKFTKLLFR NQMGVMFLQG 240
  241 ATMHTYLLEK SRVVYQAQGE RNYHIFYQLC AARSKYPELV LDHQDKFQFL NMGGAPEIER 300
  301 VSDAEQFNET VQAMTVLGFS IQQIADIVKI LAGILHLGNI QVSKKFNEGS EEEDSDSCDI 360
  361 FHNDIHLQIT ADLLRVSADD LRRWLLMRKI ESVNEYVLIP NSIEAAQAAR DALAKHIYAK 420
  421 LFQYIVGVLN KSLNNGSKQC SFIGVLDIYG FETFEVNSFE QFCINYANEK LQQQFNQHVF 480
  481 KLEQEEYLKE GITWTMIDFY DNQPCIDLIE SRLGVLDLLD EECRMPKGSD ESWAGKLIGK 540
  541 CNKFPHFEKP RFGTTSFFIK HFSDTVEYDV NGFLEKNRDT VSKELTQVLS ESNMSLAKQV 600
  601 MTLEEIDTLC VDSAKSSTLG GRVVISAGRK QQGNDTRRRV VPSKQHRKTV GSQFQESLAS 660
  661 LISTLHATTP HYVRCIKPND DKVAFKWETA KIIQQLRACG VLETVRISAA GFPSRWLYPD 720
  721 FYMRYQLLVY RSKLDKNDMK LSCRNIVMKW IQDEDKYRFG NTQIFFRAGQ VAFLEQVRAN 780
  781 LRKKYITIVQ SVVRRFVYRR QFLRIQKVIN GIQKHARGYL ARERTQKMRE ARAGLILSKY 840
  841 ARGWLCRRRY LRLRHSISGI QTYARGMLAR NKFHAMRDHY RAVQIQRFVR GALARRAYQK 900
  901 RRRNIIICQA AIRRFLARRK FKRMKAEAKT ISHMENKYMG LENKIISMQQ RIDELNRDNS 960
  961 NLKHKTSEIS VLKMKLELKK TLEAEFKNVK AACQDKDKLI EALNKQLEAE RDEKMQLLEE1020
 1021 NGHAQEEWIS QKQTWRQENE ELRRQIDEII DMAKNAEVNQ RNQE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2dfsA
Description: No description for 2dfsA was found.

Predicted Domain #2
Region A:
Residues: [1065-1211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRMLAEIDNR ELNEAYQRAI KDKEVIENEN FMLKEELSRL TAGSFSLHAR KASNASSQNE  60
   61 DDVGYASAKN TLDINRPPDL LSKNYSYNDS TSLVVKLRSI LEEEKQKHKV LQEQYIKLSS 120
  121 RHKPTEDSFR VSELEVENEK LRSEYDQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.37
Match: 1jchA
Description: Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [1212-1384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRTSIKHGVE INELNAQHAA LQEEVRRRRE ECIQLKAVLL QQSQSMRSLE PESLQMRGND  60
   61 VNELMEAFHS QKLINRQLES ELKAITEEHN SKLVEMTQEI ERLNNEKDEL QKVMFESIDE 120
  121 FEDSNVDTLR QNDRYLRREL QKAVAQFLLV QEELKLANAK LKAYRQDGGQ LEH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 2i1jA
Description: No description for 2i1jA was found.

Predicted Domain #4
Region A:
Residues: [1385-1800]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIEEEMIRNK SNGTSADVGA NVTKQKSQNP QGLMKFHSSD LDKILQRLLS ALTPRTVVGL  60
   61 LPGFPAYLIF MCIRYTDLTN ADDDVRELLS KFVIQIKKMH RTPHPIENRV IWLVNSITLL 120
  121 NLMKQYGDVD EYVKFNTEKQ NQQQLKNFNL FEYRRVILDL IVNLYQALIM QIQGLLDPKI 180
  181 VPAILNNDEI QRGRQAHGMR SRATSIGASS SPEHGGGPAW KQLIGQLEHF YKQFQHFGLD 240
  241 NCYAEQIFHQ LLYFICAVAL NCLMLRGDIC MWETGMIIRY NIGCIEDWVR SKKMSNDVLT 300
  301 ALAPLNQVSQ LLQSRKSEQD VQTICDLCTS LSTAQVLKVM KSYKLDDYES EITNVFLEKL 360
  361 TEKLNARQMQ KSNSDEFTID QKFIQPFKVV FRYSDIKLED IELPSHLNLD EFLTKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.0
Match: 2f6hX
Description: Myosin V cargo binding domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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