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View Structure Prediction Details

Protein: l(2)01289-PA
Organism: Drosophila melanogaster
Length: 857 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(2)01289-PA.

Description E-value Query
Range
Subject
Range
gi|6984070, gi|6... - gi|6984070|gb|AAF34749.1| l(2)01289 H9 form [Drosophila melanogaster], gi|6984066|gb|AAF34747.1| l(2...
491.0 [0..1] [857..1]

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Predicted Domain #1
Region A:
Residues: [1-468]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFTRLKTLS LLVCALLALS FPGHVSGAGN NNNKKGSQPV APPEPEAVIE EVNAKQLEKL  60
   61 LADKDYVAVF WYARSCVTCD KVLAELEKID DDTDSFGVDF VKINDKRLAK QYGIKNFPAL 120
  121 TYFREKEPII YDGDLMDEEG VLDFLTSLEA MDLPDRIEEV NAKILQKIIE DTDFVAVLFY 180
  181 DKDQKKSQKI LAELENIDDE CDQNDIAFVK IDDDKEAKEW GIDEIPSIVL FERGIPHIYE 240
  241 GDLMKEDELL GWLVHQKRYS EIPEVTDEMK DKLVENTEHL AVIFYDKDDK QDMRILNELE 300
  301 NIDDELEKEG IVIVRIDNAA EAKEYGLDHL PALIYFENKI PALYEGDLMN EDEVLEWLLV 360
  361 QKKTATIEEV TDEILVTLIN EHEYVVVFFT GPCEPGETCE HTLNALESID DELDEAGIIF 420
  421 VTTEDTGIAK KYNVKTYPRL VFFRNRDPLH FTGDLDDEDE VLAWITDD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.0
Match: 2b5eA
Description: Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [469-686]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETLEIPGKIE EVNVKMLDKI LAENDHVVVF FYAEGDKKAQ KILNELENID DECEEKDIDF  60
   61 VKTSDDDIDK EYDLPGLPAL AFYRHKFRTI YTGDLMKEEE ILEWVIDLHE STADVIESVD 120
  121 RKTLQVLIND VEHLAVFFYD DECESCSDIL EELENIDDDT DKHGIQFVKS NDVKLAHEIG 180
  181 IFAFPALVYY ETGVPIMYDG NLKNENRVLQ WLVNQKND

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.39794
Match: 1a8yA
Description: CRYSTAL STRUCTURE OF CALSEQUESTRIN FROM RABBIT SKELETAL MUSCLE SARCOPLASMIC RETICULUM AT 2.4 A RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [687-857]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ECFYVGLGHD GHSAKRGNNF VPNDYKPFQC CPTKLEKSTK VPKMTAQRIG HSEGDQGKRP  60
   61 SGGNFQFANQ ASSKSSTKPA AIKKQAKPSK DTDDDDEDDE DKPLVKVSYA NKRSGGSNKP 120
  121 QAGKKPVGKG QDNDDQSQEV EKVSKQKSAK KSGKLNVKSG YLSVGVRQQF N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.30103
Match: 2h8lA
Description: No description for 2h8lA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle