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View Structure Prediction Details

Protein: CE40500
Organism: Caenorhabditis elegans
Length: 402 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40500.

Description E-value Query
Range
Subject
Range
CE39909 - WBGene00008346 status:Partially_confirmed TR:O45318 protein_id:CAB01138.2
475.0 [0..1] [402..7]

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Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANSTLSHV GIDSDNESVY DLMSSLEHRK KVDDEFQLVF QKAQEAINKG IQPSLIPEGS  60
   61 SGSYFVYGLE GEIVGVFKPK DEEPFASLNP KWPKFFQRML CFCCFGRACL IPNTGYLSEA 120
  121 AASIVSEMLQ LDVVPTTRIV KLA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [144-402]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSFFYSRFF GHYDVRPKEG SFQLYVNGYE SGNTVFARWN YDKNLLSDEE GAKFQLLFQK  60
   61 MCIVDYVIRN TDRHMDNLLV RHVPGEEINL AAIDNGLAFP VRHPECTSRF RSFPFRWSNL 120
  121 PWAQGEFDPV LRRHVLSLLT PQFVHRLCVD LKKLFRHGIA SSNYMLVNSQ LRVVRGQIWN 180
  181 LRQAILANES PGEMACRDPI IVSRSSDIVM SNPPPPRGMI GLLSSHLATP NNNSSDVTMK 240
  241 TAIEHEKENS TVPENLITL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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