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View Structure Prediction Details

Protein: CE40524
Organism: Caenorhabditis elegans
Length: 405 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40524.

Description E-value Query
Range
Subject
Range
CE16823 - status:Partially_confirmed UniProt:O76682 protein_id:AAC27095.1
223.0 [0..219] [404..452]

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Predicted Domain #1
Region A:
Residues: [1-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPSVPGYSQ RDPLLTISDS ILIISAPIAL FLTDVFYGDP KARDSNLITR YITILANTTS  60
   61 ILFARDSTFL ASETTTNPAP MSAGIQTRGS YANTKSLPVP DLPPSTLKTT TKPVITATRS 120
  121 TARITTTKAS TLEPPEAPTK ASTARTISTT ETTTSPPTT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.34
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [160-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVTPRTTRSS TARTVATTKT SPSTLRTTTK PPTTTTIATT RITTKTTTSP PPFTTTVTTT  60
   61 TSAARTIA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [228-405]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTTPIKTVPP VKVFGKAIKP IPTPGENILD FEYDIVKDKY SQSPENGLFS QVYDVKNIRR  60
   61 IRDTNTNEVY FGLVDGADHG TISWRFDKDL NNNKIGRVDI EVRDDEEYSY NGKAIATFCI 120
  121 ADECWIIRRN SVTSIYDTKH GQINVIFILT GGDAQIFRRS LGEEAHFPSW KLTVHTSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.0
Match: 2g9gA
Description: No description for 2g9gA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle