YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0307646, gem...
Organism:	Drosophila melanogaster
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0307646, gem....

Description	E-value	Query Range	Subject Range
LAMB4_DANRE - Laminin subunit beta-4 OS=Danio rerio GN=lamb4 PE=2 SV=1	133.0	[0..14]	[176..1658]
gi\|187024193, gi... - gi\|39594275\|emb\|CAE71853.1\| Hypothetical protein CBG18897 [Caenorhabditis briggsae], gi\|187024193\|em... gi\|157763942 - gi\|157763942\|ref\|XP_001674314.1\| Hypothetical protein CBG18897 [Caenorhabditis briggsae AF16]	122.0	[0..7]	[178..526]
mrck-1 - serine\/threonine-protein kinase status:Partially_confirmed UniProt:O01583 protein_id:AAB52260.3	121.0	[0..5]	[178..526]
gi\|47216210 - gi\|47216210\|emb\|CAG01244.1\| unnamed protein product [Tetraodon nigroviridis]	110.0	[0..11]	[189..227]
gi\|73966687 - gi\|73966687\|ref\|XP_548232.2\| PREDICTED: similar to Peripheral-type benzodiazepine receptor-associate...	107.0	[0..15]	[190..248]
CG6509-PA, CG6509-PB - This gene is referred to in FlyBase by the symbol Dmel\CG6509 (CG6509, FBgn0032363). It is a protein...	106.0	[0..7]	[185..198]
gi\|109491594, gi... - gi\|109491594\|ref\|XP_001081125.1\| PREDICTED: similar to Peripheral-type benzodiazepine receptor-assoc...	105.0	[0..15]	[189..324]
gi\|34327964 - gi\|34327964\|dbj\|BAA31587.2\| KIAA0612 protein [Homo sapiens]	105.0	[0..15]	[189..283]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSAARVYI QVETEAEQKE HLKQQRQTLK PLQGNVNDKE NLTGSGRASI VDQLSRLKAG  60
   61 VQVAPKYGKR KCVDTAPAIS TKDADTQTDA EAVPLGNADK PITAEDLTST AEPGENYYKL 120
  121 LAEQRRLALE DSLTENRHLH ERIEGLEEEM DTMRQELDEA KNLVEVLKEI CEEDNSEVEE 180
  181 DDTTGDEDKV NA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits