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View Structure Prediction Details

Protein: CG30440-PA
Organism: Drosophila melanogaster
Length: 1057 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG30440-PA.

Description E-value Query
Range
Subject
Range
gi|125806568, gi... - gi|54635240|gb|EAL24643.1| GA15847-PA [Drosophila pseudoobscura], gi|125806568|ref|XP_001357519.1| G...
339.0 [0..335] [1015..1]

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Predicted Domain #1
Region A:
Residues: [1-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPKMQIHP TKMEEDSDTR NSTYVPKMEL LMTHYIHEGK KAIMYRSSEP QIAARRNKKT  60
   61 RFVGNRRQLR NLSQPENSHK TSRSLCPDTA KTEPKVYSLR FVLNKSEDKD YMSRLKAQND 120
  121 FSQSSCLCNN LSHANTEAGA YQNDGILKGQ RDHSDFLTAA GGIQSRADRI ARIETCGIRT 180
  181 THLQPETQIL KPVTEPNETR FDQHSPDWLF KNSRIGDVSN SS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [223-394]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLSACNSELP PEEYKGRTLY HDTKFDCAYI KNRRPLITTE SKMSITEAEH PQTKYTDIKY  60
   61 DYKTCSISQG LHQNKAFLNK VPPSKQSKPF HSVDYDYYEN IQKLHLSKES ERQIRDNGDP 120
  121 NDLQNFLKKN LIKATTNELL KAAAQSTKKC NIDLERKLND LNIKEEDHTS ND

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [395-499]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGNSYKNDPY LVSMSKINSC KFIRSYNRDC ETIFPTGDHS DLNEFRKSFM PQSVDLLSSA  60
   61 SVSLSSCDGS CLNKDSICGS EEDCCECNEY QCIATPPNEL SKDCL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [500-606]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAVEEGVFCN TEYDDFHENL TSSCCCSGSF CDDDGCSYLD EGLSVDIKSK NVQSLHESGT  60
   61 DEKLSRKTIL LARTEDTNDV TQGISDGTTY FTGSLNITHL PKSNEIF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [607-945]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKPQDPEMQR HRRGHILKEL FETEKIYVNE IASILKGYYD RLKSDESAPA SLQGKANVLF  60
   61 GNLNEIYSFH NDVFLKDLEN CISVTERVAL CFVKRRDKFY QLYSFYCQNI QRSEKLRETL 120
  121 VDTHMFFKEC QIGLGHKLPL GAYLLKPVQR ITKYQLLLKD LLLFTDNDSC RNELKNALDC 180
  181 MLIVLKCVND SMHQISITGF SGDLAKQGEL LMQDSFQVWI ESKKDIRLRM KPKRRHIFLY 240
  241 QKSLLLCKQT SKSGYNKSSY QFKSDVKMSQ IGLTESVSGD AKRFEVWLKG RQEVYTLQAS 300
  301 TIGVKEMWVA EIKRVLFNQL EKLKGDQIAR YNIRHQSLW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.0
Match: 1kz7A
Description: Dbl's big sister, Dbs
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [946-1057]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKSSCEAPNI THCSLRRTEC FELPLNDSNR NTNIRSEKTC LSDQNIVNGP SVQDQHEKNS  60
   61 WSSDCSDIDE DETINPILMQ KTGQPKLLWN RSSSHQVFIK SKYILSRKTV NN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle