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View Structure Prediction Details

Protein: Pomp-PA
Organism: Drosophila melanogaster
Length: 134 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Pomp-PA.

Description E-value Query
Range
Subject
Range
gi|38048099 - gi|38048099|gb|AAR09952.1| similar to Drosophila melanogaster CG9324 [Drosophila yakuba]
180.0 [0..1] [133..1]
gi|10834776 - gi|10834776|gb|AAG23819.1|AF275807_1 PNAS-110 [Homo sapiens]
177.0 [0..4] [131..15]
POMP_BOVIN - Proteasome maturation protein OS=Bos taurus GN=POMP PE=2 SV=1
172.0 [0..4] [132..15]
gi|57104896 - gi|57104896|ref|XP_534518.1| PREDICTED: similar to CG9324-PA [Canis familiaris]
171.0 [0..4] [132..15]
gi|27691986, gi|... - gi|27691986|ref|XP_213700.1| PREDICTED: similar to Pomp CG9324-PA [Rattus norvegicus], gi|171847036|...
170.0 [0..4] [132..15]
gi|12849209 - gi|12849209|dbj|BAB28250.1| unnamed protein product [Mus musculus]
169.0 [0..4] [132..15]
gi|9828633 - gi|9828633|gb|AAG00256.1|AC002130_21 F1N21.7 [Arabidopsis thaliana]
160.0 [0..5] [132..3]

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Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQPSLKVQP AEVSVLNATG RVGMPTEANC LNQLAHVHRL RDSELNYNEH QYNRNMQMLR  60
   61 NHEGLGVPLK MGMERFAARQ VGRLPFLSSS NFMDDVLTGR CDSIGFEDFM NLPENSEHMR 120
  121 QPHAVVEKSL GIYQ

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 71.008774
Match: PF05348.2
Description: No description for PF05348.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle