YRC Public Data Repository - Protein Structure Prediction

Protein:	sNPF-PA
Organism:	Drosophila melanogaster
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sNPF-PA.

Description	E-value	Query Range	Subject Range
sNPF-PB - The gene short neuropeptide F precursor is referred to in FlyBase by the symbol Dmel\sNPF (CG13968, ...	515.0	[0..1]	[300..1]
gi\|54644431, gi\|... - gi\|54644431\|gb\|EAL33172.1\| GA12665-PA [Drosophila pseudoobscura], gi\|125984698\|ref\|XP_001356113.1\| G...	382.0	[0..1]	[285..1]
gi\|157167861, gi... - gi\|157167861\|ref\|XP_001662646.1\| short neuropeptide F precursor, putative [Aedes aegypti], gi\|108871...	91.0	[0..59]	[226..32]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHLKRELSQ GCALALICLV SLQMQQPAQA EVSSAQGEHL VQPPPEKQSS KDSFLGTPLS  60
   61 NLYDNLLQRE YAGPVVFPNH QVERKAQRSP SLRLRFGRSD PDMLNSIVEK RWFGDVNQKP 120
  121 IRSPSLRLRF GRRDPSLPQM RRTAYDDLLE RELTLNSQQQ QQQLGTEPDS DLGADYDGLY 180
  181 ERVVRKPQRL RWGRSVPQFE ANNADNEQIE RSQWYNSLLN SDKMRRMLVA LQQQYEIPEN 240
  241 VASYANDEDT DTDLNNDTSE FQREVRKPMR LRWGRSTGKA PSEQKHTPEE TSSIPPKTQN 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits