YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0297292, CG5...
Organism:	Drosophila melanogaster
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0297292, CG5....

Description	E-value	Query Range	Subject Range
gi\|149701755 - gi\|149701755\|ref\|XP_001496955.1\| PREDICTED: hypothetical protein [Equus caballus] LTOR3_BOVIN - Ragulator complex protein LAMTOR3 OS=Bos taurus GN=LAMTOR3 PE=2 SV=1 gi\|57109160, gi\|... - gi\|74002016\|ref\|XP_862390.1\| PREDICTED: similar to mitogen-activated protein kinase kinase 1 interac...	204.0	[0..1]	[121..1]
MAPKSP1 - MAPK scaffold protein 1 gi\|123999680, gi... - gi\|123999680\|gb\|ABM87380.1\| mitogen-activated protein kinase kinase 1 interacting protein 1 [synthet... gi\|114595356, gi... - gi\|114595360\|ref\|XP_001167710.1\| PREDICTED: mitogen-activated protein kinase kinase 1 interacting pr... ENSCJAT00000029626 - null gi\|109075110 - gi\|109075110\|ref\|XP_001107957.1\| PREDICTED: similar to mitogen-activated protein kinase kinase 1 int...	203.0	[0..1]	[121..1]
LTOR3_CHICK - Ragulator complex protein LAMTOR3 OS=Gallus gallus GN=LAMTOR3 PE=2 SV=1 LTOR3_TAEGU - Ragulator complex protein LAMTOR3 OS=Taeniopygia guttata GN=LAMTOR3 PE=2 SV=1	203.0	[0..1]	[121..1]
LTOR3_PONAB - Ragulator complex protein LAMTOR3 OS=Pongo abelii GN=LAMTOR3 PE=2 SV=1 MK1I1_PONPY - Mitogen-activated protein kinase kinase 1-interacting protein 1 - Pongo pygmaeus (Orangutan)	201.0	[0..1]	[121..1]
LTOR3_PAGMA - Ragulator complex protein LAMTOR3 OS=Pagrus major GN=lamtor3 PE=2 SV=1	200.0	[0..1]	[121..1]
LTOR3_RAT - Ragulator complex protein LAMTOR3 OS=Rattus norvegicus GN=Lamtor3 PE=2 SV=1	198.0	[0..1]	[121..1]
LTOR3_MOUSE - Ragulator complex protein LAMTOR3 OS=Mus musculus GN=Lamtor3 PE=1 SV=1	196.0	[0..1]	[121..1]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDIKKYLD GLLQKVSGLY VIQITDRDGV PLLRVSQEKN VDFALMPSFI PTFTTACDQA  60
   61 SKLGLGRNKT IISMYSNYQV VQMNKLPLIL TFVGAENCNT GHILALEHQV DGYLEDIKQA 120
  121 VTEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.30103
Match:	1skoA
Description:	MP1-p14 Complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits