YRC Public Data Repository - Protein Structure Prediction

Protein:	CG6380-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG6380-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|21064099 - gi\|21064099\|gb\|AAM29279.1\| AT17004p [Drosophila melanogaster]	312.0	[0..110]	[293..1]
gi\|63701773, gi\|... - gi\|63701773\|ref\|XP_484582.2\| PREDICTED: hypothetical protein [Mus musculus], gi\|149268296\|ref\|XP_001...	206.0	[0..6]	[180..120]
gi\|74002974 - gi\|74002974\|ref\|XP_535781.2\| PREDICTED: similar to protein phosphatase 1, regulatory (inhibitor) sub...	202.0	[0..6]	[180..149]
gi\|109053998 - gi\|109053998\|ref\|XP_001097826.1\| PREDICTED: similar to protein phosphatase 1, regulatory (inhibitor)...	190.0	[0..6]	[153..11]
gi\|114591204 - gi\|114591204\|ref\|XP_516963.2\| PREDICTED: protein phosphatase 1, regulatory (inhibitor) subunit 2 iso...	189.0	[0..6]	[153..11]
PPP1R2 - protein phosphatase 1, regulatory (inhibitor) subunit 2	189.0	[0..6]	[153..11]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGDQVKGIL KSGNNSAQFS LKAAKFDEVN ILATFHPAGK DYGHMIIDEP KTPFVFEEDL  60
   61 PKELDTNALI EKLRHTSKSE MPAFGIEGDS EESSADEDFP ESVEEKVRRM EFERRRKVHY 120
  121 KEFYSVPLAR RLIADEFAEL TSSEFNIHCE GGMESCEACS ENNQLDGEAS NLTQTKYSYS 180
  181 E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	2o8aI
Description:	No description for 2o8aI was found.

Predicted Domain #2

Region A:
Residues: [182-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQSEYRISDH SEPEPGFSPS HHCYQKLKAE LFSKAEPEEL ASLTHLHRMP SVNDDEPSRE  60
   61 PRVPYPSVVP TQTQNLHEHK SSLKITSEKP TPARICKSNP DNRPGTSKKE TR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits