YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0300958, FBp...
Organism:	Drosophila melanogaster
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0300958, FBp....

Description	E-value	Query Range	Subject Range
gi\|76689273 - gi\|76689273\|ref\|XP_881129.1\| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 1 ...	159.0	[0..17]	[217..142]
gi\|48734702 - gi\|48734702\|gb\|AAH71591.1\| PABPC4 protein [Homo sapiens]	155.0	[0..17]	[217..133]
gi\|82802755 - gi\|82802755\|gb\|ABB92428.1\| PABP3 [Pongo pygmaeus]	155.0	[0..17]	[217..133]
gi\|73976793 - gi\|73976793\|ref\|XP_857617.1\| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 1 ...	155.0	[0..17]	[217..133]
gi\|55959639, gi\|... - gi\|66267552\|gb\|AAH94755.1\| PABPC4 protein [Homo sapiens], gi\|55962217\|emb\|CAI12298.1\| poly(A) bindin... gi\|114555673 - gi\|114555673\|ref\|XP_001170937.1\| PREDICTED: poly A binding protein, cytoplasmic 4 isoform 1 [Pan tro...	155.0	[0..17]	[217..133]

Back

Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKMKMSLD DIIKMKFNKN KFVNAKNERV QGGSIRKRNS EGGLRGIQRS RNGTGFIRKS  60
   61 KFKQETLLKP PKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	2f3jA
Description:	No description for 2f3jA was found.

Predicted Domain #2

Region A:
Residues: [74-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTLVMVCNLD YGVDDDDIME LFNQDGVVEK GFVHYDRDGN SLGTAHLSFK YREEAFQIIE  60
   61 QFHGVRLDGR RLKLHLVQNT RNFKRTDVDD LSLRMGSFKT RFLQNGTFKT RSLQNGFQKS 120
  121 RLFRNSSFKP RPFKKHNFKS RAFDTDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1ha1A
Description:	HNRNP A1 (RBD1,2) FROM HOMO SAPIENS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	2.34356093608328	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: