YRC Public Data Repository - Protein Structure Prediction

Protein:	zuc-PA
Organism:	Drosophila melanogaster
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for zuc-PA.

Description	E-value	Query Range	Subject Range
gi\|77972671, gi\|... - gi\|77972671\|ref\|ZP_00828231.1\| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin ...	169.0	[0..1]	[243..18]
CLS_YERPS - Cardiolipin synthase OS=Yersinia pseudotuberculosis GN=cls PE=3 SV=1 CLSA_YERPB - Cardiolipin synthase A OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=clsA PE=3 SV=1 CLSA_YERPS - Cardiolipin synthase A OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=clsA PE=3 SV=1	168.0	[0..1]	[243..18]
tr\|A0A085TBR9\|A0... - Cardiolipin synthase A OS=Vibrio cholerae GN=cls PE=3 SV=1 gi\|254224828, gi... - gi\|75820111\|ref\|ZP_00750166.1\| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin ...	168.0	[0..1]	[247..18]
gi\|149365891, gi... - gi\|149365891\|ref\|ZP_01887926.1\| cardiolipin synthetase [Yersinia pestis CA88-4125], gi\|149292304\|gb\|... gi\|16122418, gi\|... - gi\|218929286\|ref\|YP_002347161.1\| cardiolipin synthetase [Yersinia pestis CO92], gi\|16122418\|ref\|NP_4... CLSA_YERPP - Cardiolipin synthase A OS=Yersinia pestis (strain Pestoides F) GN=clsA PE=3 SV=1 CLSA_YERPG - Cardiolipin synthase A OS=Yersinia pestis bv. Antiqua (strain Angola) GN=clsA PE=3 SV=1 CLSA_YERP3 - Cardiolipin synthase A OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=clsA PE=3 S... gi\|166961781, gi... - gi\|167420086\|ref\|ZP_02311839.1\| cardiolipin synthetase [Yersinia pestis biovar Orientalis str. MG05-... gi\|167425026, gi... - gi\|167425026\|ref\|ZP_02316779.1\| cardiolipin synthetase [Yersinia pestis biovar Mediaevalis str. K197... gi\|229688545, gi... - gi\|229898255\|ref\|ZP_04513402.1\| cardiolipin synthase 1 [Yersinia pestis biovar Orientalis str. India... gi\|229693947, gi... - gi\|229897610\|ref\|ZP_04512766.1\| cardiolipin synthase 1 [Yersinia pestis biovar Orientalis str. PEXU2... CLSA_YERPE - Cardiolipin synthase A OS=Yersinia pestis GN=clsA PE=3 SV=1 gi\|229894864, gi... - gi\|229894864\|ref\|ZP_04510043.1\| cardiolipin synthase 1 [Yersinia pestis Pestoides A], gi\|229702157\|g... gi\|89104999, gi\|... - gi\|89104999\|ref\|ZP_01177527.1\| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin ... CLSA_YERPA - Cardiolipin synthase A OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=clsA PE=3 SV=1 CLSA_YERPN - Cardiolipin synthase A OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=clsA PE=3 SV=1 gi\|165920682, gi... - gi\|165927416\|ref\|ZP_02223248.1\| cardiolipin synthetase [Yersinia pestis biovar Orientalis str. F1991... gi\|166009253, gi... - gi\|166009253\|ref\|ZP_02230151.1\| cardiolipin synthetase [Yersinia pestis biovar Antiqua str. E1979001... gi\|166211179, gi... - gi\|166211179\|ref\|ZP_02237214.1\| cardiolipin synthetase [Yersinia pestis biovar Antiqua str. B4200300... gi\|167049832, gi... - gi\|167400979\|ref\|ZP_02306485.1\| cardiolipin synthetase [Yersinia pestis biovar Antiqua str. UG05-045...	167.0	[0..1]	[243..18]
gi\|254285387, gi... - gi\|254285387\|ref\|ZP_04960352.1\| cardiolipin synthase [Vibrio cholerae AM-19226], gi\|197753234\|ref\|YP... gi\|229529300, gi... - gi\|229529300\|ref\|ZP_04418690.1\| cardiolipin synthetase [Vibrio cholerae 12129(1)], gi\|229333074\|gb\|E... gi\|229523760, gi... - gi\|229523760\|ref\|ZP_04413165.1\| cardiolipin synthetase [Vibrio cholerae bv. albensis VL426], gi\|2293... gi\|153213887, gi... - gi\|153213887\|ref\|ZP_01949089.1\| cardiolipin synthase [Vibrio cholerae 1587], gi\|124115625\|gb\|EAY3444... tr\|D7H9E8\|D7H9E8... - Cardiolipin synthase A OS=Vibrio cholerae RC385 GN=clsA PE=3 SV=1 gi\|194535778, gi... - gi\|75824415\|ref\|ZP_00753870.1\| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin ...	167.0	[0..1]	[247..18]
gi\|77960752 - gi\|77960752\|ref\|ZP_00824610.1\| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin ...	167.0	[0..1]	[243..18]
gi\|22125925, gi\|... - gi\|22125925\|ref\|NP_669348.1\| cardiolipin synthetase [Yersinia pestis KIM], gi\|21958864\|gb\|AAM85599.1... gi\|45441787, gi\|... - gi\|45441787\|ref\|NP_993326.1\| cardiolipin synthetase [Yersinia pestis biovar Microtus str. 91001], gi...	167.0	[0..1]	[243..25]
gi\|77957084, gi\|... - gi\|77957084\|ref\|ZP_00821150.1\| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin ...	166.0	[0..1]	[243..18]
gi\|77977781, gi\|... - gi\|77977781\|ref\|ZP_00833221.1\| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin ...	166.0	[0..1]	[243..18]
gi\|75831007, gi\|... - gi\|75831007\|ref\|ZP_00760275.1\| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin ... gi\|75827024, gi\|... - gi\|75827024\|ref\|ZP_00756459.1\| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin ... gi\|121727294, gi... - gi\|75815821\|ref\|ZP_00746312.1\| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin ... gi\|227009709, gi... - gi\|227081821\|ref\|YP_002810372.1\| cardiolipin synthase [Vibrio cholerae M66-2], gi\|227009709\|gb\|ACP05... gi\|229355724, gi... - gi\|229508219\|ref\|ZP_04397724.1\| cardiolipin synthetase [Vibrio cholerae BX 330286], gi\|229355724\|gb\|... gi\|229518681, gi... - gi\|229518681\|ref\|ZP_04408124.1\| cardiolipin synthetase [Vibrio cholerae RC9], gi\|229343370\|gb\|EEO083... gi\|121548820, gi... - gi\|121586985\|ref\|ZP_01676764.1\| cardiolipin synthase [Vibrio cholerae 2740-80], gi\|121548820\|gb\|EAX5... gi\|229370448, gi... - gi\|229607793\|ref\|YP_002878441.1\| cardiolipin synthetase [Vibrio cholerae MJ-1236], gi\|229370448\|gb\|A... gi\|124119381, gi... - gi\|153221759\|ref\|ZP_01952644.1\| cardiolipin synthase [Vibrio cholerae MAK 757], gi\|124119381\|gb\|EAY3... gi\|126512291, gi... - gi\|153817142\|ref\|ZP_01969809.1\| cardiolipin synthase [Vibrio cholerae NCTC 8457], gi\|126512291\|gb\|EA... gi\|15641674, gi\|... - gi\|9656185\|gb\|AAF94820.1\| cardiolipin synthase [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|15... gi\|229511542, gi... - gi\|229511542\|ref\|ZP_04401021.1\| cardiolipin synthetase [Vibrio cholerae B33], gi\|229351507\|gb\|EEO164... gi\|11279669 - pir\|\|C82171 cardiolipin synthase VC1670 [imported] - Vibrio cholerae (strain N16961 serogroup O1)	166.0	[0..1]	[247..18]

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Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLITQIIMKQ IRDYPIVSTI SIAVSTVLAS EVIWKLVQCS RSKREKASRV HEVIIFNELG  60
   61 EICAAVHMRN SSMGSQKPQV SPCCNTHCSL RNVAKIVEQI DRAVYSIDLA IYTFTSLFLA 120
  121 DSIKRALQRG VIIRIISDGE MVYSKGSQIS MLAQLGVPVR VPITTNLMHN KFCIIDGFER 180
  181 VEEIRLLRKL KFMRPCYSIV ISGSVNWTAL GLGGNWENCI ITADDKLTAT FQAEFQRMWR 240
  241 AFAKTEGSQI QLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1byrA
Description:	Nuclease Nuc
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.762303478549781	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: