YRC Public Data Repository - Protein Structure Prediction

Protein:	porin-PA, FBpp03...
Organism:	Drosophila melanogaster
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for porin-PA, FBpp03....

Description	E-value	Query Range	Subject Range
gi\|114619980 - gi\|114619980\|ref\|XP_001138480.1\| PREDICTED: similar to voltage dependent anion channel form 3 [Pan t...	356.0	[0..2]	[282..290]
VDAC2_MOUSE - Voltage-dependent anion-selective channel protein 2 OS=Mus musculus GN=Vdac2 PE=1 SV=2 gi\|53733651 - gb\|AAH83965.1\| Unknown (protein for MGC:98006) [Xenopus laevis]	350.0	[0..3]	[282..16]
ENSPTRT00000004999 - null gi\|55664663, gi\|... - gi\|57209203\|emb\|CAI40914.1\| voltage-dependent anion channel 2 [Homo sapiens], gi\|55664663\|emb\|CAH731...	350.0	[0..3]	[282..30]
VDAC2_RAT - Voltage-dependent anion-selective channel protein 2 OS=Rattus norvegicus GN=Vdac2 PE=1 SV=2	350.0	[0..3]	[282..16]
gi\|540011 - pir\|\|A38102 voltage-dependent anion channel-like protein - rat gi\|299036 - gi\|299036\|gb\|AAB26053.1\| B-36 VDAC=36 kda voltage dependent anion channel [rats, hippocampus, Peptid...	349.0	[0..3]	[282..16]
VDAC2_PIG - Voltage-dependent anion-selective channel protein 2 OS=Sus scrofa GN=VDAC2 PE=2 SV=1	347.0	[0..3]	[282..15]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPSYSDLG KQARDIFSKG YNFGLWKLDL KTKTSSGIEF NTAGHSNQES GKVFGSLETK  60
   61 YKVKDYGLTL TEKWNTDNTL FTEVAVQDQL LEGLKLSLEG NFAPQSGNKN GKFKVAYGHE 120
  121 NVKADSDVNI DLKGPLINAS AVLGYQGWLA GYQTAFDTQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	8.29243
Match:	PF01459.13
Description:	No description for PF01459.13 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.894	N/A	N/A	b.1.1	Immunoglobulin

Predicted Domain #2

Region A:
Residues: [161-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKLTTNNFAL GYTTKDFVLH TAVNDGQEFS GSIFQRTSDK LDVGVQLSWA SGTSNTKFAI  60
   61 GAKYQLDDDA SVRAKVNNAS QVGLGYQQKL RDGVTLTLST LVDGKNFNAG GHKIGVGLEL 120
  121 EA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.02
Match:	2ervA
Description:	No description for 2ervA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits