YRC Public Data Repository - Protein Structure Prediction

Protein:	CG13121-PA
Organism:	Drosophila melanogaster
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG13121-PA.

Description	E-value	Query Range	Subject Range
gi\|444644 - gi\|444644\|prf\|\|1907286A Na channel	129.0	[0..7]	[107..78]
SCNNA_MOUSE - Amiloride-sensitive sodium channel subunit alpha OS=Mus musculus GN=Scnn1a PE=1 SV=2	127.0	[0..7]	[107..78]
gi\|109095194 - gi\|109095194\|ref\|XP_001103409.1\| PREDICTED: similar to sodium channel, nonvoltage-gated 1 alpha isof...	127.0	[0..7]	[107..110]
gi\|114643031 - gi\|114643031\|ref\|XP_508948.2\| PREDICTED: sodium channel, nonvoltage-gated 1 alpha [Pan troglodytes]	127.0	[0..7]	[107..112]
gi\|73997755 - gi\|73997755\|ref\|XP_534912.2\| PREDICTED: similar to sodium channel, nonvoltage-gated 1 alpha [Canis f...	126.0	[0..7]	[107..71]
gi\|38197485 - gi\|38197485\|gb\|AAH06526.2\| SCNN1A protein [Homo sapiens]	126.0	[0..7]	[107..95]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARVEESYYR RLFREFLRQS YINGLHPFLY HTPVRYAKAI WLAFLTAIMI YTHIVIADLI  60
   61 LEYLVQPTEI HMAPDLVHVA NSPFPAVGVC TSNKINGRLL RSYAEKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	2qtsA
Description:	No description for 2qtsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits