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View Structure Prediction Details

Protein: RpS13-PB, RpS13-...
Organism: Drosophila melanogaster
Length: 151 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RpS13-PB, RpS13-....

Description E-value Query
Range
Subject
Range
gi|109139180 - gi|109139180|ref|XP_001119129.1| PREDICTED: similar to ribosomal protein S13 [Macaca mulatta]
234.0 [0..1] [150..1]
gi|61369380 - gi|61369380|gb|AAX43326.1| ribosomal protein S13 [synthetic construct]
233.0 [0..1] [151..1]
RS13_CHICK - 40S ribosomal protein S13 OS=Gallus gallus GN=RPS13 PE=2 SV=3
CCDS7823.1_1 - null
gi|51980681 - gb|AAH82187.1| Unknown (protein for MGC:98670) [Xenopus laevis]
gi|55635357 - gi|55635357|ref|XP_508306.1| PREDICTED: hypothetical protein [Pan troglodytes]
ENSCJAT00000018561 - null
gi|109107163 - gi|109107163|ref|XP_001086088.1| PREDICTED: similar to ribosomal protein S13 [Macaca mulatta]
RS13_MOUSE - 40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2
gi|197127940, gi... - gi|197127940|gb|ACH44438.1| putative ribosomal protein S13 variant 1 [Taeniopygia guttata], gi|19712...
RPS13 - ribosomal protein S13
RS13_BOVIN - 40S ribosomal protein S13 OS=Bos taurus GN=RPS13 PE=2 SV=3
gi|73988614, gi|... - gi|73988614|ref|XP_864902.1| PREDICTED: similar to ribosomal protein S13 isoform 2 [Canis familiaris...
gi|123995225, gi... - gi|61359234|gb|AAX41687.1| ribosomal protein S13 [synthetic construct], gi|123995225|gb|ABM85214.1| ...
gi|542155715|ref... - PREDICTED: 40S ribosomal protein S13 isoform X2 [Zonotrichia albicollis], PREDICTED: 40S ribosomal p...
ENSOCUP000000048... - pep:novel scaffold:oryCun2:GL018733:1083722:1086211:-1 gene:ENSOCUG00000005536 transcript:ENSOCUT000...
tr|M3W3Y8|M3W3Y8... - Ribosomal protein S13 OS=Felis catus GN=RPS13 PE=3 SV=1
RS13_RAT - 40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=1 SV=2
gi|149719481 - gi|149719481|ref|XP_001504999.1| PREDICTED: similar to ribosomal protein S13 [Equus caballus]
gi|57730 - gi|57730|emb|CAA37458.1| unnamed protein product [Rattus rattus]
233.0 [0..1] [151..1]
gi|38101780, gi|... - gi|39975009|ref|XP_368895.1| 40S ribosomal protein S13 [Magnaporthe grisea 70-15], gb|EAA48691.1| hy...
233.0 [0..1] [151..1]
gi|210104597, gi... - gi|219460218|ref|XP_002227825.1| hypothetical protein BRAFLDRAFT_115249 [Branchiostoma floridae], gi...
gi|24266981 - gi|24266981|gb|AAN52387.1| ribosomal protein S13 [Branchiostoma belcheri]
233.0 [0..1] [151..1]
gi|54609309, gi|... - gi|54609309|gb|AAV34870.1| ribosomal protein S13 [Bombyx mori], gi|148298648|ref|NP_001091754.1| rib...
233.0 [0..1] [151..1]
RS13_XENLA - 40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2
gi|89269947, gi|... - gi|89269947|emb|CAJ81269.1| ribosomal protein S13 [Xenopus tropicalis], gi|62860010|ref|NP_001016602...
232.0 [0..1] [151..1]
RS13_SPOFR - 40S ribosomal protein S13 OS=Spodoptera frugiperda GN=RpS13 PE=2 SV=3
232.0 [0..1] [151..1]
RS13_CRIGR - 40S ribosomal protein S13 OS=Cricetulus griseus GN=RPS13 PE=3 SV=3
232.0 [0..1] [151..1]

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Predicted Domain #1
Region A:
Residues: [1-61]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRMHAPGKG ISQSALPYRR TVPSWLKLNA DDVKEQIKKL GKKGLTPSKI GIILRDSHGV  60
   61 A

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 37.769551
Match: PF08069.3
Description: No description for PF08069.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.632 N/A N/A a.65.1 Annexin
View Download 0.559 N/A N/A a.65.1 Annexin
View Download 0.559 N/A N/A a.4.1 Homeodomain-like
View Download 0.532 N/A N/A a.4.1 Homeodomain-like
View Download 0.526 N/A N/A d.68.7 R3H domain

Predicted Domain #2
Region A:
Residues: [62-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVRFVNGNKI LRIMKSVGLK PDIPEDLYHM IKKAVAIRKH LERNRKDKDG KFRLILVESR  60
   61 IHRLARYYKT KSVLPPNWKY ESSTASALVA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.221849
Match: 1yshE
Description: Localization and dynamic behavior of ribosomal protein L30e
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle