YRC Public Data Repository - Protein Structure Prediction

Protein:	slmo-PC, slmo-PB...
Organism:	Drosophila melanogaster
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for slmo-PC, slmo-PB....

Description	E-value	Query Range	Subject Range
PRLD1_CHICK - PRELI domain-containing protein 1, mitochondrial OS=Gallus gallus GN=PRELID1 PE=2 SV=1	290.0	[0..2]	[211..3]
gi\|62859183, gi\|... - gi\|89268217\|emb\|CAJ83452.1\| px19-like protein [Xenopus tropicalis], gi\|62859183\|ref\|NP_001016173.1\| ...	285.0	[0..1]	[214..2]
gi\|27924260, gi\|... - gi\|27924260\|gb\|AAH44981.1\| Px19-prov protein [Xenopus laevis], gi\|147905742\|ref\|NP_001080406.1\| px19...	278.0	[0..1]	[214..2]
gi\|58390015, gi\|... - gi\|58390015\|ref\|XP_317435.2\| ENSANGP00000011654 [Anopheles gambiae str. PEST], gi\|55237648\|gb\|EAA123...	274.0	[0..1]	[207..1]
gi\|74219629 - gi\|74219629\|dbj\|BAE29582.1\| unnamed protein product [Mus musculus]	273.0	[0..1]	[214..2]
gi\|54645522, gi\|... - gi\|54645522\|gb\|EAL34260.1\| GA21566 [Drosophila pseudoobscura pseudoobscura], gi\|125986859\|ref\|XP_001... gi\|125986859\|ref... - GA21566-PA [Drosophila pseudoobscura], GA21566 [Drosophila pseudoobscura pseudoobscura] gi\|194106180, gi... - gi\|195146510\|ref\|XP_002014227.1\| GL19083 [Drosophila persimilis], gi\|194106180\|gb\|EDW28223.1\| GL1908...	271.0	[0..1]	[215..1]
gi\|46391945, gi\|... - gi\|46391945\|gb\|AAS91007.1\| kiser [Bombyx mori], gi\|112982946\|ref\|NP_001037094.1\| kiser [Bombyx mori]	270.0	[0..1]	[205..1]
gi\|157137858, gi... - gi\|157137858\|ref\|XP_001657198.1\| MSF1 protein, putative [Aedes aegypti], gi\|108869628\|gb\|EAT33853.1\|...	269.0	[0..1]	[207..12]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIWTSEHIF NHPWETVTQA AWRKYPNPMT PSIIGTDVVE RRVVDGVLHT HRLVQSKWYF  60
   61 PKWTHALIGT AKTCFASERS TVDPERKQMV LKTNNLTFCR NISVDEVLYY EPHPSDASKT 120
  121 LLKQEATVTV FGVPLSHYME DLLTSTISTN AGKGRQGLEW VIGLINTEVK GIARGTDELL 180
  181 HNTRRSIDEV TESARKSMDE ISAQAAKAAK AMHIT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	81.69897
Match:	PF04707.5
Description:	No description for PF04707.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits