YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0311490, CG8...
Organism:	Drosophila melanogaster
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0311490, CG8....

Description	E-value	Query Range	Subject Range
gi\|54644837\|gb\|E... - GA21258-PA [Drosophila pseudoobscura], GA21258 [Drosophila pseudoobscura pseudoobscura] gi\|125985499, gi... - gi\|54644837\|gb\|EAL33577.1\| GA21258 [Drosophila pseudoobscura pseudoobscura], gi\|125985499\|ref\|XP_001...	188.0	[0..1]	[126..1]
gi\|187023363, gi... - gi\|39580837\|emb\|CAE73098.1\| Hypothetical protein CBG20477 [Caenorhabditis briggsae], gi\|187023363\|em...	177.0	[0..5]	[125..7]
nduf-6 - NADH_ubiquinone oxidoreductase subunit status:Confirmed UniProt:Q19724 protein_id:CAA95810.1	176.0	[0..5]	[125..7]
gi\|28917220, gi\|... - gi\|32403914\|ref\|XP_322570.1\| hypothetical protein [Neurospora crassa], gi\|28917220\|gb\|EAA26933.1\| NA... gi\|85078453 - gi\|85078453\|ref\|XP_956169.1\| NADH:ubiquinone oxidoreductase 18.4kD subunit [Neurospora crassa OR74A]	171.0	[0..2]	[126..22]
gi\|82906344 - gi\|82906344\|ref\|XP_894909.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 6 [M...	167.0	[0..37]	[123..29]
gi\|109504524, gi... - gi\|149032791\|gb\|EDL87646.1\| rCG41951, isoform CRA_a [Rattus norvegicus], gi\|109504524\|ref\|XP_0010530...	165.0	[0..37]	[123..29]
gi\|46125063, gi\|... - gi\|46125063\|ref\|XP_387085.1\| hypothetical protein FG06909.1 [Gibberella zeae PH-1], gi\|42553655\|gb\|E...	165.0	[0..2]	[126..26]
NDUS6_PONPY - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo pygmaeus GN=NDUFS6 PE=... NDUS6_PONAB - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo abelii GN=NDUFS6 PE=2 ...	164.0	[0..37]	[123..37]
gi\|39941514, gi\|... - gi\|39941514\|ref\|XP_360294.1\| hypothetical protein MGG_05668 [Magnaporthe grisea 70-15], gb\|EAA54877....	164.0	[0..1]	[126..26]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKQLVNNL SKLGLPRQNW MSPLASVRHS SCRGDIEKVT HTGQVFDKED YRNARFVNAK  60
   61 RYVNENWGIK LIEEVPPKEC TERVVFCDGG DGPLGHPKVY INLDKPGNHI CGYCGLRFVK 120
  121 KDDHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.0
Match:	2jvmA
Description:	No description for 2jvmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits