YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0303868, rob...
Organism:	Drosophila melanogaster
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0303868, rob....

Description	E-value	Query Range	Subject Range
gi\|56203991, gi\|... - gi\|56204931\|emb\|CAI23309.1\| dynein, light chain, roadblock-type 1 [Homo sapiens], gi\|56203991\|emb\|CA...	172.0	[0..3]	[97..54]
gi\|109129304 - gi\|109129304\|ref\|XP_001111256.1\| PREDICTED: similar to dynein, cytoplasmic, light polypeptide 2B iso...	168.0	[0..3]	[97..31]
gi\|50753873 - gi\|50753873\|ref\|XP_414162.1\| PREDICTED: similar to dynein, cytoplasmic, light chain 2B; dynein, cyto...	167.0	[0..3]	[97..67]
gi\|157109684, gi... - gi\|157109684\|ref\|XP_001650782.1\| dynein light chain, putative [Aedes aegypti], gi\|108878966\|gb\|EAT43... gi\|167869847, gi... - gi\|170031427\|ref\|XP_001843587.1\| dynein light chain [Culex quinquefasciatus], gi\|167869847\|gb\|EDS332...	164.0	[0..1]	[97..1]
gi\|58382053, gi\|... - gi\|58385864\|ref\|XP_314262.2\| ENSANGP00000018736 [Anopheles gambiae str. PEST], gi\|58382053\|ref\|XP_31...	162.0	[0..1]	[97..4]
gi\|194755331, gi... - gi\|194755331\|ref\|XP_001959945.1\| GF13122 [Drosophila ananassae], gi\|190621243\|gb\|EDV36767.1\| GF13122... gi\|125807922\|ref... - GA10543-PA [Drosophila pseudoobscura], GA10543 [Drosophila pseudoobscura pseudoobscura] gi\|195150365, gi... - gi\|195150365\|ref\|XP_002016125.1\| GL11426 [Drosophila persimilis], gi\|194109972\|gb\|EDW32015.1\| GL1142... gi\|125807922, gi... - gi\|54635740\|gb\|EAL25143.1\| GA10543 [Drosophila pseudoobscura pseudoobscura], gi\|125807922\|ref\|XP_001... gi\|193902507, gi... - gi\|195027271\|ref\|XP_001986507.1\| GH21399 [Drosophila grimshawi], gi\|193902507\|gb\|EDW01374.1\| GH21399... gi\|194144906, gi... - gi\|195382785\|ref\|XP_002050109.1\| GJ20372 [Drosophila virilis], gi\|194144906\|gb\|EDW61302.1\| GJ20372 [... gi\|194126245, gi... - gi\|195357853\|ref\|XP_002045128.1\| GM26651 [Drosophila sechellia], gi\|195335225\|ref\|XP_002034275.1\| GM... gi\|194178539, gi... - gi\|195488732\|ref\|XP_002092438.1\| GE11664 [Drosophila yakuba], gi\|194178539\|gb\|EDW92150.1\| GE11664 [D... gi\|195455879, gi... - gi\|195455879\|ref\|XP_002074906.1\| GK22899 [Drosophila willistoni], gi\|194170991\|gb\|EDW85892.1\| GK2289... gi\|220950796, gi... - gi\|220959572\|gb\|ACL92329.1\| robl-PA [synthetic construct], gi\|220950796\|gb\|ACL87941.1\| robl-PA [synt... gi\|195584208, gi... - gi\|195584208\|ref\|XP_002081906.1\| GD11269 [Drosophila simulans], gi\|194193915\|gb\|EDX07491.1\| GD11269 ... robl-PA - The gene roadblock is referred to in FlyBase by the symbol Dmel\robl (CG10751, FBgn0024196). It is a...	161.0	[0..1]	[97..1]
gi\|57087115 - gi\|57087115\|ref\|XP_536771.1\| PREDICTED: similar to dynein, cytoplasmic, light chain 2B [Canis famili... tr\|G1SVF4\|G1SVF4... - Uncharacterized protein OS=Oryctolagus cuniculus GN=DYNLRB2 PE=4 SV=2 DLRB2_BOVIN - Dynein light chain roadblock-type 2 OS=Bos taurus GN=DYNLRB2 PE=3 SV=1	161.0	[0..3]	[97..2]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEVEELLK RFQSMKNVTG IVVVDNDGIP IKTTLDYTLT LHYAALMQTV REKARQVVLD  60
   61 LDATNEFTFL RLRTEQNEVM LCPQEDYFIM VIQSPCD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	2hz5A
Description:	No description for 2hz5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits