YRC Public Data Repository - Protein Structure Prediction

Protein:	CG10908-PA, FBpp...
Organism:	Drosophila melanogaster
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG10908-PA, FBpp....

Description	E-value	Query Range	Subject Range
gi\|50758070 - gi\|50758070\|ref\|XP_415746.1\| PREDICTED: similar to carcinoma related gene [Gallus gallus]	292.0	[0..3]	[244..127]
gi\|54639131, gi\|... - gi\|54639131\|gb\|EAL28533.1\| GA13336-PA [Drosophila pseudoobscura], gi\|125776769\|ref\|XP_001359387.1\| G...	258.0	[0..3]	[237..4]
gi\|114665974 - gi\|114665974\|ref\|XP_511992.2\| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes] ENSCJAT00000022013 - null gi\|168278134 - gi\|168278134\|dbj\|BAG11045.1\| derlin-2 [synthetic construct] gi\|109112945 - gi\|109112945\|ref\|XP_001101490.1\| PREDICTED: similar to Der1-like domain family, member 2 [Macaca mul... DERL2 - Der1-like domain family, member 2 gi\|73955289 - gi\|73955289\|ref\|XP_848354.1\| PREDICTED: similar to Der1-like domain family, member 2 isoform 1 [Cani... tr\|G1SMK6\|G1SMK6... - pep:novel chromosome:oryCun2:19:12909437:12922849:-1 gene:ENSOCUG00000004811 transcript:ENSOCUT00000... gi\|194675605 - gi\|194675605\|ref\|XP_001789969.1\| PREDICTED: Der1-like domain family, member 2 [Bos taurus] DERL2_PONAB - Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1 DERL2_PONPY - Derlin-2 - Pongo pygmaeus (Orangutan)	256.0	[0..2]	[244..5]
DERL2_MOUSE - Derlin-2 OS=Mus musculus GN=Derl2 PE=1 SV=2 gi\|149053255, gi... - gi\|149053255\|gb\|EDM05072.1\| rCG34415, isoform CRA_c [Rattus norvegicus], gi\|109491204\|ref\|XP_0010799...	255.0	[0..2]	[244..5]
gi\|66267283, gi\|... - gi\|66773149\|ref\|NP_001019566.1\| Der1-like domain family, member 2 [Danio rerio], gi\|66267283\|gb\|AAH9...	255.0	[0..3]	[244..6]
gi\|89269041, gi\|... - gi\|89269041\|emb\|CAJ81565.1\| Der1-like domain family, member 3derlin-3 [Xenopus tropicalis], gi\|62859...	254.0	[0..3]	[244..6]
gi\|109488353 - gi\|109488353\|ref\|XP_001079920.1\| PREDICTED: similar to Der1-like domain family, member 2 [Rattus nor...	252.0	[0..2]	[244..5]
gi\|114665972 - gi\|114665972\|ref\|XP_001166612.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]	252.0	[0..2]	[244..5]
gi\|72015515, gi\|... - gi\|72015515\|ref\|XP_786599.1\| PREDICTED: similar to Der1-like domain family, member 2 [Strongylocentr...	251.0	[0..4]	[241..7]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAGVWYRSL PRFTRYWLTA TVVLSMLCRF DVIPLHWLHL DRSAVFSKLQ LWRCMTSLFV  60
   61 FPISSNTAFH FLINCFFIVQ YSSKLEKDQY SRSPADYLYL LIVSAVLANI GGMIFNVYFL 120
  121 MDTLVLAITY IWCQLNKDVT VSFWFGTRFK AMYLPWVLAA FEFIFHFSLA SLVGIFVGHV 180
  181 YYFFKFQYSQ DLGGTPLLET PQFLKRLVPD VSGGFGGFGL PPESRAPPRQ ATESPWGRGM 240
  241 TLGRN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	2nr9A
Description:	No description for 2nr9A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.545407789079971	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: