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View Structure Prediction Details

Protein: Clp-PA
Organism: Drosophila melanogaster
Length: 296 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Clp-PA.

Description E-value Query
Range		 Subject
Range
gi|847869 - gi|847869|gb|AAA67954.1| zinc finger protein
 232.0 [0..1] [296..1]
gi|1575709, gi|1... - gi|28277462|gb|AAH45289.1| No arches [Danio rerio], gi|18859059|ref|NP_571084.1| no arches [Danio re...
 226.0 [0..1] [292..1]
gi|73957940 - gi|73957940|ref|XP_850149.1| PREDICTED: similar to Cleavage and polyadenylation specificity factor, ...
 226.0 [0..1] [292..1]
CPSF4 - cleavage and polyadenylation specific factor 4, 30kDa
gi|109065990 - gi|109065990|ref|XP_001094527.1| PREDICTED: cleavage and polyadenylation specific factor 4, 30kD sub...
 225.0 [0..1] [292..1]
gi|114614813 - gi|114614813|ref|XP_519234.2| PREDICTED: cleavage and polyadenylation specific factor 4, 30kD subuni...
 223.0 [0..1] [292..1]
CPSF4_XENLA - Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus laevis GN=cpsf4 PE=2 SV=1
 220.0 [0..1] [292..1]
CPSF4_XENTR - Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1
 220.0 [0..1] [292..1]
gi|125987603, gi... - gi|13111867|gb|AAH03101.1| Cleavage and polyadenylation specific factor 4, 30kDa [Homo sapiens], gi|...
gi|109065988 - gi|109065988|ref|XP_001094280.1| PREDICTED: cleavage and polyadenylation specific factor 4, 30kDa is...
 215.0 [0..1] [292..1]

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Predicted Domain #1
Region A:
Residues: [1-146] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDILLANVSG LQFKAERDLI EQVGAIPLPF YGMDKSIAAV CNFITRNGQE CDKGSACPFR  60
   61 HIRGDRTIVC KHWLRGLCKK GDQCEFLHEY DMTKMPECYF YSRFNACHNK ECPFLHIDPQ 120
  121 SKVKDCPWYK RGFCRHGPHC RHQHLR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 2d9nA
Description: No description for 2d9nA was found.

Predicted Domain #2
Region A:
Residues: [147-195] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVLCMDYLAG FCPEGPSCKH MHPHFELPPL AELGKDQLHK KLPTCHYCG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.54
Match: 2cqeA
Description: Solution Structure of the Zinc-finger domain in KIAA1064 protein
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [196-296] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELGHKANSCK QYVGSLEHRN NINAMDHSGG HSGGYSGHSG HIEGADDMQS NHHSQPHGPG  60
   61 FVKVPTPLEE ITCYKCGNKG HYANKCPKGH LAFLSNQHSH K

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.38
Match: 1a1tA
Description: HIV nucleocapsid
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle