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View Structure Prediction Details

Protein: MK_RAT
Organism: Rattus norvegicus
Length: 140 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MK_RAT.

Description E-value Query
Range
Subject
Range
gi|76630354 - gi|76630354|ref|XP_875804.1| PREDICTED: similar to Midkine precursor (MK) (Neurite outgrowth-promoti...
181.0 [0..30] [125..33]
gi|109106582 - gi|109106582|ref|XP_001112400.1| PREDICTED: midkine (neurite growth-promoting factor 2) [Macaca mula...
179.0 [0..30] [138..33]
gi|84872485 - gi|84872485|gb|ABC67288.1| midkine b [Carassius auratus gibelio]
171.0 [0..4] [127..2]
gi|26351105 - gi|26351105|dbj|BAC39189.1| unnamed protein product [Mus musculus]
170.0 [0..31] [123..61]
gi|50415451 - gi|50415451|gb|AAH77546.1| Unknown (protein for MGC:83455) [Xenopus laevis]
170.0 [0..2] [129..3]
gi|50540927, gi|... - ref|NP_001003981.1| heparin-binding neurite-promoting factor [Danio rerio], gi|50540927|gb|AAT77950...
169.0 [0..3] [140..2]
MDK - midkine (neurite growth-promoting factor 2)
gi|123993089, gi... - gi|124000079|gb|ABM87548.1| midkine (neurite growth-promoting factor 2) [synthetic construct], gi|12...
169.0 [0..30] [125..33]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHRSFFLLA LVALLAVTTA VAKKKDKVKK GSECSEWTWG PCTPSSKDCG MGFREGTCGA  60
   61 QTQRIHCKVP CNWKKEFG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.17
Match: 1mknA
Description: Midkine, a heparin-binding growth factor, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [79-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADCKYKFESW GACDGSTGTK ARQGTLKKAR YNAQCQETIR VTKPCTSKTK SKAKAKKGKG  60
   61 KD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 36.0
Match: PF01091.9
Description: No description for PF01091.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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