YRC Public Data Repository - Protein Structure Prediction

Protein:	GBG5_RAT
Organism:	Rattus norvegicus
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GBG5_RAT.

Description	E-value	Query Range	Subject Range
GBG7_MOUSE - Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7 OS=Mus musculus GN=Gng7 PE=1 SV=2 gi\|117616394 - gi\|117616394\|gb\|ABK42215.1\| G protein gamma 7 [synthetic construct]	1.0E-24	[1..68]	[1..68]
GNG7 - guanine nucleotide binding protein (G protein), gamma 7 gi\|109122851 - gi\|109122851\|ref\|XP_001098800.1\| PREDICTED: similar to guanine nucleotide binding protein (G protein... gi\|114674554 - gi\|114674554\|ref\|XP_001152049.1\| PREDICTED: guanine nucleotide binding protein (G protein), gamma 7 ... gi\|208968219 - gi\|208968219\|dbj\|BAG73948.1\| FLJ00058 [synthetic construct]	2.0E-24	[1..68]	[1..68]
GBG7_RAT - Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7 OS=Rattus norvegicus GN=Gng7 PE=2 ...	3.0E-24	[1..68]	[1..68]
gi\|50539862, gi\|... - gi\|50539862\|ref\|NP_001002397.1\| guanine nucleotide binding protein (G protein), gamma 7 [Danio rerio...	3.0E-24	[1..68]	[1..68]
gi\|47229899 - gi\|47229899\|emb\|CAG10313.1\| unnamed protein product [Tetraodon nigroviridis]	3.0E-24	[1..68]	[1..68]
gi\|62858615, gi\|... - gi\|89273841\|emb\|CAJ81829.1\| guanine nucleotide binding protein (G protein), gamma 7 [Xenopus tropica...	5.0E-24	[1..68]	[1..68]
gi\|73987490 - gi\|73987490\|ref\|XP_854961.1\| PREDICTED: similar to guanine nucleotide binding protein, gamma 7 [Cani... tr\|M3WPC5\|M3WPC5... - Guanine nucleotide-binding protein subunit gamma OS=Felis catus GN=GNG7 PE=3 SV=1 gi\|149759365 - gi\|149759365\|ref\|XP_001493747.1\| PREDICTED: similar to Guanine nucleotide-binding protein G(I)/G(S)/... GBG7_BOVIN - Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7 OS=Bos taurus GN=GNG7 PE=1 SV=1	6.0E-24	[1..68]	[1..68]
gi\|120577547, gi... - gi\|50416410\|gb\|AAH77778.1\| MGC80106 protein [Xenopus laevis], gi\|120577547\|gb\|AAI30055.1\| MGC80106 p...	1.0E-23	[1..68]	[1..68]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSSSVAAM KKVVQQLRLE AGLNRVKVSQ AAADLKQFCL QNAQHDPLLT GVSSSTNPFR  60
   61 PQKVCSFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.045757
Match:	1xhmB
Description:	The Crystal Structure of a Biologically Active Peptide (SIGK) Bound to a G Protein Beta:Gamma Heterodimer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits