YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75773239, gi\|...
Organism:	Rattus norvegicus
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75773239, gi|....

Description	E-value	Query Range	Subject Range
SAP18_BOVIN - Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1	271.0	[0..1]	[153..1]
gi\|21410831 - gi\|21410831\|gb\|AAH30836.1\| Sin3A-associated protein, 18kDa [Homo sapiens] gi\|167773709 - gi\|167773709\|gb\|ABZ92289.1\| Sin3A-associated protein, 18kDa [synthetic construct]	271.0	[0..1]	[153..1]
tr\|M3W6Y5\|M3W6Y5... - Sin3A associated protein 18 OS=Felis catus GN=SAP18 PE=4 SV=1 gi\|73993530 - gi\|73993530\|ref\|XP_534536.2\| PREDICTED: similar to sin3 associated polypeptide p18 [Canis familiaris...	271.0	[0..1]	[153..20]
gi\|134023791, gi... - gi\|89268231\|emb\|CAJ82462.1\| sin3-associated polypeptide, 18kDa [Xenopus tropicalis], gi\|89267930\|emb...	267.0	[0..1]	[153..1]
gi\|45383520, gi\|... - gi\|45383520\|ref\|NP_989643.1\| Sin3A-associated protein, 18kDa [Gallus gallus], gi\|14522846\|dbj\|BAB610... gi\|197129568, gi... - gi\|197129573\|gb\|ACH46071.1\| putative sin3-associated polypeptide 18 kDa [Taeniopygia guttata], gi\|19...	265.0	[0..1]	[153..1]
gi\|37589667, gi\|... - gi\|41152291\|ref\|NP_957014.1\| sin3-associated polypeptide [Danio rerio], gi\|37589667\|gb\|AAH59482.1\| S...	265.0	[0..1]	[153..1]
gi\|114648942 - gi\|114648942\|ref\|XP_509567.2\| PREDICTED: Sin3A-associated protein, 18kDa [Pan troglodytes]	265.0	[0..1]	[153..1]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVESRVTQE EIKKEPEKPI DREKTCPLLL RVFTTNNGRH HRMDEFSRGN VPSSELQIYT  60
   61 WMDATLKELT SLVKEVYPEA RKKGTHFNFA IVFMDLKRPG YRVKEIGSTM SGRKGTDDSM 120
  121 TLQSQKFQIG DYLDIAITPP NRAPPSSGRM RPY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.0
Match:	2hdeA
Description:	No description for 2hdeA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits