YRC Public Data Repository - Protein Structure Prediction

Protein:	RL23_RAT
Organism:	Rattus norvegicus
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL23_RAT.

Description	E-value	Query Range	Subject Range
RpL23-PA - The gene Ribosomal protein L23 is referred to in FlyBase by the symbol Dmel\RpL23 (CG3661, FBgn00100... gi\|190622099, gi... - gi\|194757096\|ref\|XP_001960801.1\| GF13548 [Drosophila ananassae], gi\|190622099\|gb\|EDV37623.1\| GF13548... gi\|125811487\|ref... - GA17595-PA [Drosophila pseudoobscura], GA17595 [Drosophila pseudoobscura pseudoobscura] gi\|54637062, gi\|... - gi\|54637062\|gb\|EAL26465.1\| GA17595 [Drosophila pseudoobscura pseudoobscura], gi\|125811487\|ref\|XP_001... gi\|195585839, gi... - gi\|195585839\|ref\|XP_002082686.1\| GD11716 [Drosophila simulans], gi\|194194695\|gb\|EDX08271.1\| GD11716 ... gi\|195028698, gi... - gi\|195028698\|ref\|XP_001987213.1\| GH21796 [Drosophila grimshawi], gi\|193903213\|gb\|EDW02080.1\| GH21796... gi\|194884631, gi... - gi\|194884631\|ref\|XP_001976307.1\| GG22807 [Drosophila erecta], gi\|190659494\|gb\|EDV56707.1\| GG22807 [D... gi\|195170286, gi... - gi\|195170286\|ref\|XP_002025944.1\| GL10129 [Drosophila persimilis], gi\|194110808\|gb\|EDW32851.1\| GL1012... gi\|193910648, gi... - gi\|195122160\|ref\|XP_002005580.1\| GI20545 [Drosophila mojavensis], gi\|193910648\|gb\|EDW09515.1\| GI2054... gi\|195384353, gi... - gi\|195384353\|ref\|XP_002050882.1\| GJ22396 [Drosophila virilis], gi\|194145679\|gb\|EDW62075.1\| GJ22396 [... gi\|195346883, gi... - gi\|195346883\|ref\|XP_002039984.1\| GM15964 [Drosophila sechellia], gi\|194135333\|gb\|EDW56849.1\| GM15964... gi\|194178617, gi... - gi\|195488916\|ref\|XP_002092516.1\| RpL23 [Drosophila yakuba], gi\|194178617\|gb\|EDW92228.1\| RpL23 [Droso... gi\|194157409, gi... - gi\|195426403\|ref\|XP_002061324.1\| GK20786 [Drosophila willistoni], gi\|194157409\|gb\|EDW72310.1\| GK2078...	2.0E-48	[1..140]	[1..140]
gi\|91085777 - gi\|91085777\|ref\|XP_974360.1\| PREDICTED: similar to ribosomal protein L23e [Tribolium castaneum]	5.0E-48	[1..140]	[1..140]
gi\|66558956 - gi\|66558956\|ref\|XP_392812.2\| PREDICTED: similar to Ribosomal protein L23 CG3661-PA [Apis mellifera] gi\|62083503 - gi\|62083503\|gb\|AAX62476.1\| ribosomal protein L23 [Lysiphlebus testaceipes] gi\|156545547 - gi\|156545547\|ref\|XP_001605069.1\| PREDICTED: similar to ribosomal protein L23 [Nasonia vitripennis] gi\|90819996 - gi\|90819996\|gb\|ABD98755.1\| putative ribosomal protein L17/23 [Graphocephala atropunctata]	5.0E-48	[1..140]	[1..140]
RL23_DANRE - 60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1 gi\|47216271 - gi\|47216271\|emb\|CAG05967.1\| unnamed protein product [Tetraodon nigroviridis] gi\|51038319 - gi\|51038319\|gb\|AAT94068.1\| ribosomal protein L23 [Sparus aurata]	5.0E-48	[1..140]	[1..140]
RL23_PONAB - 60S ribosomal protein L23 OS=Pongo abelii GN=RPL23 PE=2 SV=1 RL23_PONPY - 60S ribosomal protein L23 - Pongo pygmaeus (Orangutan)	7.0E-48	[1..140]	[1..140]
gi\|70909731 - gi\|70909731\|emb\|CAJ17291.1\| ribosomal protein L23e [Sphaerius sp. APV-2005]	7.0E-48	[1..140]	[1..140]
gi\|32400871 - gi\|32400871\|gb\|AAP80667.1\|AF479048_1 ribosomal Pr 117 [Triticum aestivum]	8.0E-48	[1..139]	[8..146]
gi\|15081322 - gi\|15081322\|gb\|AAK83857.1\|AF395586_1 ribosomal protein L17/23 [Spodoptera frugiperda] gi\|49532860 - gi\|49532860\|dbj\|BAD26665.1\| Ribosomal protein L17/23 [Plutella xylostella] gi\|54609237, gi\|... - gi\|54609237\|gb\|AAV34834.1\| ribosomal protein L23 [Bombyx mori], gi\|112984274\|ref\|NP_001037227.1\| rib... gi\|116788749 - gi\|116788749\|gb\|ABK24983.1\| unknown [Picea sitchensis]	9.0E-48	[1..140]	[1..140]
gi\|67084029 - gi\|67084029\|gb\|AAY66949.1\| 60S ribosomal protein L23 [Ixodes scapularis]	9.0E-48	[1..140]	[1..140]
RL23_BOVIN - 60S ribosomal protein L23 - Bos taurus (Bovine)	9.0E-48	[1..140]	[1..140]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRGRGGSS GAKFRISLGL PVGAVINCAD NTGAKNLYII SVKGIKGRLN RLPAAGVGDM  60
   61 VMATVKKGKP ELRKKVHPAV VIRQRKSYRR KDGVFLYFED NAGVIVNNKG EMKGSAITGP 120
  121 VAKECADLWP RIASNAGSIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	1s1iR
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits